RNA id: TU237930


Basic Information

Item Value
RNA id TU237930
length 1684
lncRNA type sense_over
GC content 0.38
exon number 3
gene id tmem120b
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18391739 ~ 18400446 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTTGTCAAACCATATCTGACTGACTGCAGCGACCATTTGTGTAGTATTCTGTGTCATGTTGTCCCAAGGTCACTGTTACAGTTTTGTGTCTCCACAGAGGGATTTCAGTCCTGGATGTGGAGAGGCCTCACTTTTCTTTTACCATTCCTCTTTTTTGGCCATTTTTGGCAGCTCTACAACTCGGTGACCCTGTTTCGTTTGGGAGGACGTGAGGACTGTAAGGAGTGGCAGaaatgtCTGGTCTCTAATGCCTGGTTCTCCCTCCAGCCTGTAACAGcaaaaaaataagtatttttatttagaaaaatttAAAGAtggtagtgtttttttttgtcatttcccaGAAAGCAATCATGCTGAAGAGAATCCCAATATTTATGTATCACTTTTATTGAgggaacattaaagcatgttgaGTTACTGACCAAAATGTTACATTTGATGCGAGAGAGCTGCCagaatgcacaaaaaaaacttgatttCTTCATTTTTACGATGTAGCTAATGTGAAACAATGTTTTCATCATTCATTTCAAGACTAACTGGTGCCTGAGATCAGTAACAAGACAGTTAACAATTTCTCAATCTGTGTACATtgttgtaaaaaatatatattaaacacCTAATTAAATTGTTTTGCTATTTCTGTGTTTCTTGTGCAATGGgataaaaagtaatttaatttatttcagtGTTCCTTCCTTACTGTGTGGGAATTGTGGAAATCCCATAACTGTGCAGCCATACCACACATTCAGTATTTCCAACACTAGTGGGCGCTGCTGGTAAAGGTAAGATTCCTGCTTTAAATTGACACCGCTCCAAAACAAATTCTagttcactgttttttttactggaCATGAGCTAATACTCTTGGGTGgtgatcacttttttttttctttcaaggCTGTTAAAGCTACTGTGCCGTGATACATTGAATTACACCAGCTATTCTGTCTGGGAATTGTTATCTACCAGCAGCTTTTAAACAAGATTCAGACATTTGAAATCGATTGGCATTACAAAACCTGTGGAAAAATCTGACAACACAAGAACTAAGTGTTCAAATTCCTCCAACAGATGGCTATACATTTCAATAAAACAGGTTTGGAAACAGTACAAAGCTTCTGtcagaaaaatatataaaaatacaaaaaacatgtCTCAtagaaaagtaaaaatacatTCACAGAAGGCTTTTCAAGTAGCATACCGCTCTGTCGCTTCTTCCAAAATTGTCTTTCCTGTTACGTCGTTTTCTTCAGTAAAGGGCTGATGAGTCAGTGAGGCCCAGACTTATGTCTGAACCAGTGGTCATACAGCTGCTTCCACATCTGTCTAGGACACCAAGCATCTTAAGTCTCCAAATGTCCAACCACTTTTAATGTGAATGAGTGGTTTTCAAAAAAATCTAGCCCGTGGAGTCCTCAAGAATCTGTTGTTTTGACttcacaaaacaacacatttcttcttcctcttgtaATTCCTTTTCTTTCGATTGAAGGCCAAAGTTCTTACGGTGGTCTCCCTGAAAATGTCTTCCACGTTCTCCTGATACTTCGCCGAACACTCGAGGTAGAGCTCTGCATTCATCTGCTGCCGTGTCTCTTCACCCTACATCCCAGACCAACCCAACATTGACACAAAGAATTAGACTGTATAAGGTGATAAATCGACTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237831 lncRNA upstream 67812 18328441 ~ 18328792 (+) False lrrc75bb
TU237815 lncRNA upstream 157657 18235236 ~ 18238947 (+) True G175696
TU237814 lncRNA upstream 162442 18231033 ~ 18234162 (+) True G175695
TU237805 lncRNA upstream 187545 18207774 ~ 18209059 (+) True G175687
TU237785 lncRNA upstream 248057 18147542 ~ 18148547 (+) True G175670
TU237937 lncRNA downstream 21083 18421529 ~ 18422678 (+) True G175772
TU237938 lncRNA downstream 21083 18421529 ~ 18422146 (+) False G175772
TU237965 lncRNA downstream 29238 18429684 ~ 18431697 (+) True G175792
TU237970 lncRNA downstream 49356 18449802 ~ 18451068 (+) False G175797
TU237971 lncRNA downstream 49356 18449802 ~ 18451068 (+) True G175797
XM_039779746.1 mRNA upstream 9132 18384808 ~ 18387472 (+) False orai1b
XM_039779745.1 mRNA upstream 9132 18385710 ~ 18387472 (+) False orai1b
XM_039779744.1 mRNA upstream 9132 18385713 ~ 18387472 (+) True orai1b
XM_039779743.1 mRNA upstream 36017 18342719 ~ 18360587 (+) False rnf34b
XM_039779749.1 mRNA downstream 4932 18405378 ~ 18421449 (+) True setd1ba
XM_039779748.1 mRNA downstream 6205 18406651 ~ 18421449 (+) False setd1ba
XM_039779751.1 mRNA downstream 8318 18408764 ~ 18421449 (+) False setd1ba
XM_039779747.1 mRNA downstream 8319 18408765 ~ 18421449 (+) False setd1ba
XM_039780187.1 mRNA downstream 58066 18458512 ~ 18461772 (+) False LOC120545648
TU237776 other upstream 319102 18075032 ~ 18077502 (+) False LOC120545364
TU237773 other upstream 319102 18076239 ~ 18077502 (+) False LOC120545364
TU237777 other upstream 319102 18076239 ~ 18077502 (+) False LOC120545364
TU237740 other upstream 323543 18067132 ~ 18073061 (+) False G175640
XR_005636764.1 other upstream 1140140 17241997 ~ 17256464 (+) False lhx6a
XR_005636603.1 other downstream 136185 18536631 ~ 18548141 (+) True myo1hb
TU238138 other downstream 275598 18676044 ~ 18686728 (+) False srsf9
TU238143 other downstream 275598 18676044 ~ 18723785 (+) True srsf9
TU238154 other downstream 275598 18676044 ~ 18686728 (+) False srsf9
TU238450 other downstream 979831 19380277 ~ 19387442 (+) False LOC120545529

Expression Profile