RNA id: TU238114


Basic Information

Item Value
RNA id TU238114
length 515
lncRNA type sense_over
GC content 0.37
exon number 1
gene id cabp7b
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18635026 ~ 18651069 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGTAAAGTCCAAATAAGAGGGAAAACACAGCAAGAAATTACAAAATCTCTCTAAGAAAGATCATACAAGAGTGTGTGCATAGGCATTTAAGCAAAAAGCCCAGACTTCAAGACAAATGAGGATCACACAACTTGTTAAACGTGTTTCAGAAGAGTCAGATTCAGAGATTCaaggtttattgccacagtaagtTACACTTAcgaggaatttgccttggtgattggGGCATACATAAACAGACATATTAAACATATCATATCAATCATATACTCACAGTCTGCCAGCGATAACATGTCAAATGCTGCATATTTCAAATCTGTGCATCTAGGCACCAAAATGAGTCATAATGAGTCACACTGAAAGACAATTGATTTACTGTATGGCCTGAGCTACCTGCTGTGATTAAAGTCGATCGCCACAAGTTTAGAGCTCCAACAAAATTAATTGTAACATTTATAGCAAATAACAATGAAGGATATTCAGTTCACACGATACACATGCATGTACATTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238090 lncRNA upstream 62223 18587759 ~ 18588293 (+) True G175891
TU237986 lncRNA upstream 184452 18464270 ~ 18466064 (+) True G175804
TU237970 lncRNA upstream 199448 18449802 ~ 18451068 (+) False G175797
TU237971 lncRNA upstream 199448 18449802 ~ 18451068 (+) True G175797
TU237965 lncRNA upstream 218819 18429684 ~ 18431697 (+) True G175792
TU238116 lncRNA downstream 5494 18656524 ~ 18657617 (+) False LOC120545610
TU238115 lncRNA downstream 5934 18656964 ~ 18657617 (+) False LOC120545610
TU238118 lncRNA downstream 6660 18657690 ~ 18658284 (+) True G175917
TU238127 lncRNA downstream 19353 18670383 ~ 18673965 (+) True G175925
TU238139 lncRNA downstream 25014 18676044 ~ 18686728 (+) False srsf9
XM_039780308.1 mRNA upstream 75382 18573664 ~ 18575134 (+) True m17
XM_039780863.1 mRNA upstream 79468 18562440 ~ 18571048 (+) True taok3b
XM_039780123.1 mRNA downstream 5917 18656947 ~ 18657619 (+) True LOC120545610
XM_039779670.1 mRNA downstream 24991 18676021 ~ 18686724 (+) False srsf9
XM_039779669.1 mRNA downstream 25002 18676032 ~ 18686724 (+) False srsf9
XM_039779671.1 mRNA downstream 25002 18676032 ~ 18686724 (+) False srsf9
XM_039780027.1 mRNA downstream 53743 18704773 ~ 18723257 (+) False git2b
XR_005636603.1 other upstream 102375 18536631 ~ 18548141 (+) True myo1hb
TU237776 other upstream 573014 18075032 ~ 18077502 (+) False LOC120545364
TU237773 other upstream 573014 18076239 ~ 18077502 (+) False LOC120545364
TU237777 other upstream 573014 18076239 ~ 18077502 (+) False LOC120545364
TU237740 other upstream 577455 18067132 ~ 18073061 (+) False G175640
TU238138 other downstream 25014 18676044 ~ 18686728 (+) False srsf9
TU238143 other downstream 25014 18676044 ~ 18723785 (+) True srsf9
TU238154 other downstream 25014 18676044 ~ 18686728 (+) False srsf9
TU238450 other downstream 729247 19380277 ~ 19387442 (+) False LOC120545529
unassigned_transcript_963 other downstream 866205 19517235 ~ 19517306 (+) True trnac-gca_32

Expression Profile