RNA id: XM_039780123.1


Basic Information

Item Value
RNA id XM_039780123.1
length 499
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120545610
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18656524 ~ 18657619 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTCCGTTCCTGCGCAATACGTCAATCCACCGACATGGCGCTGGCTAAGTCCGTCTACAATTTGCTCTTCAGGAGAACGTCCACTTTCGCCGTAACCATCATGGTTGGAGCGGTCTTCTTTGAACGACTATTTGACCAAGGTGGTGACGCGATCTTTGAGCAAATGAATCGCGGGAAACTATGgaaacacattaaacacaattacGAGAACAAAGAGGAGGAATAAAAGGCCGCGGGGTTAACCTAAAGGCTGAGGTGCAACTGTTGTCAGACTTCCGTCATCCATTGTTCCTGGACTCGATACCTGAATCAAACATCAGTCAACATGGACAGTGCGCTCAAAGTCATGCCTAGTGGGACCCGTGGGAGCTGATCCACACCATCATGAAGAGGGAGCAATGGTTCCTGTTACCTCTTCCTCCACTTCCTGTTATTTGTAAAGTCTTCGTTCTCCTCACATATTGTAAATGGTTAAATTAAACTTGTTAATGTGGTACA

Function

GO: NA

KEGG:

id description
K00419 QCR9, UCRC; ubiquinol-cytochrome c reductase subunit 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238114 lncRNA upstream 5917 18650516 ~ 18651030 (+) False cabp7b
TU238090 lncRNA upstream 68654 18587759 ~ 18588293 (+) True G175891
TU237986 lncRNA upstream 190883 18464270 ~ 18466064 (+) True G175804
TU237970 lncRNA upstream 205879 18449802 ~ 18451068 (+) False G175797
TU237971 lncRNA upstream 205879 18449802 ~ 18451068 (+) True G175797
TU238118 lncRNA downstream 71 18657690 ~ 18658284 (+) True G175917
TU238127 lncRNA downstream 12764 18670383 ~ 18673965 (+) True G175925
TU238139 lncRNA downstream 18425 18676044 ~ 18686728 (+) False srsf9
TU238221 lncRNA downstream 178556 18836175 ~ 18836754 (+) True G175974
TU238220 lncRNA downstream 193459 18851078 ~ 18854548 (+) True G175973
XM_039780121.1 mRNA upstream 5878 18635026 ~ 18651069 (+) True cabp7b
XM_039780308.1 mRNA upstream 81813 18573664 ~ 18575134 (+) True m17
XM_039780863.1 mRNA upstream 85899 18562440 ~ 18571048 (+) True taok3b
XM_039779670.1 mRNA downstream 18402 18676021 ~ 18686724 (+) False srsf9
XM_039779669.1 mRNA downstream 18413 18676032 ~ 18686724 (+) False srsf9
XM_039779671.1 mRNA downstream 18413 18676032 ~ 18686724 (+) False srsf9
XM_039780027.1 mRNA downstream 47154 18704773 ~ 18723257 (+) False git2b
XM_039780019.1 mRNA downstream 47214 18704833 ~ 18723257 (+) True git2b
XR_005636603.1 other upstream 108806 18536631 ~ 18548141 (+) True myo1hb
TU237776 other upstream 579445 18075032 ~ 18077502 (+) False LOC120545364
TU237773 other upstream 579445 18076239 ~ 18077502 (+) False LOC120545364
TU237777 other upstream 579445 18076239 ~ 18077502 (+) False LOC120545364
TU237740 other upstream 583886 18067132 ~ 18073061 (+) False G175640
TU238138 other downstream 18425 18676044 ~ 18686728 (+) False srsf9
TU238143 other downstream 18425 18676044 ~ 18723785 (+) True srsf9
TU238154 other downstream 18425 18676044 ~ 18686728 (+) False srsf9
TU238450 other downstream 722658 19380277 ~ 19387442 (+) False LOC120545529
unassigned_transcript_963 other downstream 859616 19517235 ~ 19517306 (+) True trnac-gca_32

Expression Profile