RNA id: TU238118


Basic Information

Item Value
RNA id TU238118
length 595
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G175917
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18657690 ~ 18658284 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttaaaattagcAACACTGTTATAGGCAAACTTTTAGGCACACAGCCAGCCTTATTATGTCTTCTTAAAGTCTATCTTCATGTACAAACTATTTTAGTTAATTGGTAAGAGGACATGGAAGGGTGTAGTTATAATTAAACtgataatttccattttttaacTGCATGGTTGCAAGCTTTTTCAAAATATGCAATGATTTGTGTCCTTTTGATAAGATAGAAGTTTTTATGGGTTTTGACAGTGTATAATTTCATGGATATACTTCCTCGTGAGCTTGGTGTGTGGTACTAATACATAAAAGAATGCAAATGTCACATTGGGTGGACAGAAGCCTGCATTTCAATGATATGTATTACTGTAGTTTGTCAAAATACAAAATCACCTGAATAAAAAGGCATGCAATTTTACAAAGAGCATGATATTAACAAAATACATAGGCTGGCTGATTAAGAGTTATACTAGTAATCAGTATATGTTATCAACATACAAGCCCTTTTAAAGTGATACTTGCACAAAATACTGTAAACAAGTATATACATAATACTTTTAAGCCAAAGGGTGActtatattttcactttgctgGGAAAGAGATGCC

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05012 Parkinson disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238116 lncRNA upstream 73 18656524 ~ 18657617 (+) False LOC120545610
TU238115 lncRNA upstream 73 18656964 ~ 18657617 (+) False LOC120545610
TU238114 lncRNA upstream 6660 18650516 ~ 18651030 (+) False cabp7b
TU238090 lncRNA upstream 69397 18587759 ~ 18588293 (+) True G175891
TU237986 lncRNA upstream 191626 18464270 ~ 18466064 (+) True G175804
TU238127 lncRNA downstream 12099 18670383 ~ 18673965 (+) True G175925
TU238139 lncRNA downstream 17760 18676044 ~ 18686728 (+) False srsf9
TU238221 lncRNA downstream 177891 18836175 ~ 18836754 (+) True G175974
TU238220 lncRNA downstream 192794 18851078 ~ 18854548 (+) True G175973
TU238449 lncRNA downstream 740886 19399170 ~ 19402367 (+) False LOC120545529
XM_039780123.1 mRNA upstream 71 18656947 ~ 18657619 (+) True LOC120545610
XM_039780121.1 mRNA upstream 6621 18635026 ~ 18651069 (+) True cabp7b
XM_039780308.1 mRNA upstream 82556 18573664 ~ 18575134 (+) True m17
XM_039780865.1 mRNA upstream 86642 18562440 ~ 18571048 (+) False taok3b
XM_039779670.1 mRNA downstream 17737 18676021 ~ 18686724 (+) False srsf9
XM_039779669.1 mRNA downstream 17748 18676032 ~ 18686724 (+) False srsf9
XM_039779671.1 mRNA downstream 17748 18676032 ~ 18686724 (+) False srsf9
XM_039780027.1 mRNA downstream 46489 18704773 ~ 18723257 (+) False git2b
XM_039780019.1 mRNA downstream 46549 18704833 ~ 18723257 (+) True git2b
XR_005636603.1 other upstream 109549 18536631 ~ 18548141 (+) True myo1hb
TU237776 other upstream 580188 18075032 ~ 18077502 (+) False LOC120545364
TU237773 other upstream 580188 18076239 ~ 18077502 (+) False LOC120545364
TU237777 other upstream 580188 18076239 ~ 18077502 (+) False LOC120545364
TU237740 other upstream 584629 18067132 ~ 18073061 (+) False G175640
TU238138 other downstream 17760 18676044 ~ 18686728 (+) False srsf9
TU238143 other downstream 17760 18676044 ~ 18723785 (+) True srsf9
TU238154 other downstream 17760 18676044 ~ 18686728 (+) False srsf9
TU238450 other downstream 721993 19380277 ~ 19387442 (+) False LOC120545529
unassigned_transcript_963 other downstream 858951 19517235 ~ 19517306 (+) True trnac-gca_32

Expression Profile