RNA id: TU238138


Basic Information

Item Value
RNA id TU238138
length 2618
RNA type TUCP
GC content 0.45
exon number 3
gene id srsf9
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18676021 ~ 18723785 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGAAGCCACAGCTAGCTGCTTGCTGTTGCTTACAAGGAAGAAGCGCAGCGTGTGGAACTGTTAGCATTAAATCTACGAAAGGAGGCGCCCTTAATTGTTTTAAAAGGGATGCAGATGATGCTGTCTACGGAAGAAATGGATATGGATATGGAGACTCCAAGCTGCGTGTGGAGTATCCTAGATCCTCTGGTGCTAAATTTGGTCCAAtgggaggtggtggtggtgaaggaggaggaggacgtggaggaggaggaggaggaggaggacctaGGGGAAGATTTGGACCCCCAACCCGAAGATCTGAATTCCGGGTCATAGTGACTGGTAGGTGGACGTCATGAGTCATAGCCAGTGCATATTTCTCTCTTTCACTGCAGCCTGGAGGTCAAGGGGATTGGTAGCATGGTGGACGTAAGAGTCGTAGGCAgatatgtttctctctctctctctctctctctctcgtggcGGATTGGAAGACAAGGGGACTAGTAGAGGACGTAAGAGTTATAGGCAGATATGTCTCTCTTCCTCATGGCGGACCCAAGGACAAGGGACTAGTAGAGGATGTCATGAGTCATAggcaaatatatttttctctccCATTGCGGACTGGAGGACAAGGGGACTAGTAGAGGACGTCATGTGTCGTAGGCAGATATGTCTCTCTCGCCTGGCGGACCGGATGACAAGGGGACTTAGGACGTCATGAGTCGTAGGCAgatatgtctctctctttcatggCGGACTGGAGAACAAGGGGACTAGTAGAGGACGTCTTGAGTCGTAGGCAGATATGTCTCTCTTCCTCATGGCGGACTGGAGGACAAGGGGACTAGTAGAGGACGTCTTGAGTCGTAGGCAGATATGTCTCTCTCCCTCATGGCGGACTGGAGGACAAGGGGACTAGTAGAGGACGTCATGAGTCGTAGGCagatatgtctctctctctttcatggcGGACTGGAAGTCAAGGAGACTAAGTGGATGAGGTCAAGTCAGCTCCTTAAGTCCTTAAAAACAAACCAGTAAAACCGGTCATTTTGGCTGCATAACCCCAAACACCAACTATAGTGACTGGTAGGTGtgatttttgtatttcattgtTTGTTGTATGCTACATTTATCTCATGTTTATACAAGCATGTTTATACAAGCTGTAGAATTAGACTGCTTATCTAAGACCAACCCCTTAAAGTCTAAGATTTATATAGTTGCCTGACTTGACCGGTCATACTAGAGCAGATTTCTGGAACTACAATACTGGGGTACTGGTCTAAACATATTGGGGTTTACTGAAACATTCATCCAATTATTTTATGTGAGCTTTTAAATTTCAGTTGTTAAGCTCATGCTTcataaaaatgtcttttataCCTACTAGTAAAGGTGTTGTTTACCCCAAGGGGTTTAGACTTTGGCCAAAAACGTAACTTGTCCCTGCAATGATTTGAAAGTGCCAGGTAATTTAAAGCAACAAAGTAAGTTTTGTCCCCTTCACATAtcacacatttttctcattCCAGGGTTACCACCAACTGGGAGCTGGCAGGATCTGAAGGATCATATGCGTGAGGCAGGAGATGTTTGTTTTGCAGATGTGCAGCGTGATGGAGAGGGCGTGGTGGAATTTCTCCGTAGAGAGGACATGGAGTACGCGTTACGCAGACTGGATCGAACAGAGTTCCGCTCTCATCAAGGTGAGACTGCTTACATCCGCGTCTATGAGGAGAGGGGCACTCCCAACTGGAATCGGTCGCGTTCCCGCTCCAGATCCAGAGGTCGCTATTCACCTCCCTACCATAACAGAGGATCCCCGCCTCCACGCTACCAGTCGCCTCCCCGTCATACTATGTCGCGCCATAGTCCACCCCCCAGGAGGCACCCTCCACAGCACCATAGCCCCCCGCCACGTCATTACCGGTAGAATAGCCCACCAGTTATAGAGGATTTGGGGAAAATGTTTTGTTattctactttctttttttttttttttttttttttttaaccccagGCCTCTTTGTAGGATAGATCATTGTTATTTCTTGCTACATACATTCCATGGTCATGATCACCTGAACAACCCCTGCTCCTCCCCACGGCCTTaaagatttctttctttgtaacACCCATATGTGTTGTCaggattttaattatttttttgaagTGAGGTAATTGGATTTGATTATCATATAACAAATTGGAGGTTTCTTTTATAAAGAAATCGTGGGTTGTGAATGATGTCATACCTTGACAGGAATTGCAATGGTTATTGTCCAAAACTAATTATTTACACAATTCTGCAGCTATCAATCTATGGTCAAACTGCTTCTTAAATCTTGACATGATTTTCCCTATTGTGTGTCGCATTTCTGTAGCTTTAAGTATGAAGTTTTTGCCAATCTAAGAACCTGTGAAGCTAATCAATATCCTACTATGatttaaaacatgtaaaattaGTGAGCCTTTTAGAGTAGTGACACAAGTTGACTGTGAGCCTCGCCTGTCagattatatttttaatgtgtgaACCTCTGACCGAGGTGGCCTGTAGGTGGACTATAATTTGTATGcatctctgttgtttttttctttaccaaTAAATGCAAACTTTTACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238127 lncRNA upstream 2079 18670383 ~ 18673965 (+) True G175925
TU238118 lncRNA upstream 17760 18657690 ~ 18658284 (+) True G175917
TU238116 lncRNA upstream 18427 18656524 ~ 18657617 (+) False LOC120545610
TU238115 lncRNA upstream 18427 18656964 ~ 18657617 (+) False LOC120545610
TU238114 lncRNA upstream 25014 18650516 ~ 18651030 (+) False cabp7b
TU238221 lncRNA downstream 149447 18836175 ~ 18836754 (+) True G175974
TU238220 lncRNA downstream 164350 18851078 ~ 18854548 (+) True G175973
TU238449 lncRNA downstream 712442 19399170 ~ 19402367 (+) False LOC120545529
TU238472 lncRNA downstream 801582 19488310 ~ 19492082 (+) True G176173
TU238477 lncRNA downstream 809308 19496036 ~ 19502184 (+) True G176177
XM_039780123.1 mRNA upstream 18425 18656947 ~ 18657619 (+) True LOC120545610
XM_039780121.1 mRNA upstream 24975 18635026 ~ 18651069 (+) True cabp7b
XM_039780308.1 mRNA upstream 100910 18573664 ~ 18575134 (+) True m17
XM_039780863.1 mRNA upstream 104996 18562440 ~ 18571048 (+) True taok3b
XM_039780865.1 mRNA upstream 104996 18562440 ~ 18571048 (+) False taok3b
XM_039780027.1 mRNA downstream 18045 18704773 ~ 18723257 (+) False git2b
XM_039780019.1 mRNA downstream 18105 18704833 ~ 18723257 (+) True git2b
XM_039780024.1 mRNA downstream 18105 18704833 ~ 18723257 (+) False git2b
XM_039780025.1 mRNA downstream 18105 18704833 ~ 18723257 (+) False git2b
XM_039780020.1 mRNA downstream 18105 18704833 ~ 18723257 (+) False git2b
XR_005636603.1 other upstream 127903 18536631 ~ 18548141 (+) True myo1hb
TU237776 other upstream 598542 18075032 ~ 18077502 (+) False LOC120545364
TU237773 other upstream 598542 18076239 ~ 18077502 (+) False LOC120545364
TU237777 other upstream 598542 18076239 ~ 18077502 (+) False LOC120545364
TU237740 other upstream 602983 18067132 ~ 18073061 (+) False G175640
TU238450 other downstream 693549 19380277 ~ 19387442 (+) False LOC120545529
unassigned_transcript_963 other downstream 830507 19517235 ~ 19517306 (+) True trnac-gca_32
TU238926 other downstream 2259956 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 3592152 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 3809685 22496413 ~ 22524368 (+) True LOC120545252

Expression Profile