RNA id: TU238220


Basic Information

Item Value
RNA id TU238220
length 389
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G175973
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18851078 ~ 18854548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTCAATGTGCTGCTGCTCTCTTTTCCATGTGTCTTTCAGTGTCTTTTCATATTCTGTCAAGCATTGGTAGCAGCAACTTACTGTTGCTGCAGTCTATGAGAGAATGTCCATCTAACTTCGGGAGTAGAGAAGCAGTCATCAACCTTATCAATTTAAACCTTAAGCAGGGTGGATTTTTCATCAGCATTTTACATGCTGTACAGCTTTGGTGTCTTTGATCCTTTTTGCCAGTCCACTACAAACACAGAGGTGCCCTGAAGAGGAAAAGGGTTTCACTCTCTGGACAAGaAATGGACGTAGAACACGGATTCTATCGGCCGGTGGATGTCCAGCCCTATGGTCACTACATTGTAGCCTTCTTTGTCTTGGTGATTGGAACAGTGGGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238221 lncRNA upstream 14324 18836175 ~ 18836754 (+) True G175974
TU238139 lncRNA upstream 164350 18676044 ~ 18686728 (+) False srsf9
TU238127 lncRNA upstream 177113 18670383 ~ 18673965 (+) True G175925
TU238118 lncRNA upstream 192794 18657690 ~ 18658284 (+) True G175917
TU238116 lncRNA upstream 193461 18656524 ~ 18657617 (+) False LOC120545610
TU238449 lncRNA downstream 544622 19399170 ~ 19402367 (+) False LOC120545529
TU238472 lncRNA downstream 633762 19488310 ~ 19492082 (+) True G176173
TU238477 lncRNA downstream 641488 19496036 ~ 19502184 (+) True G176177
TU238529 lncRNA downstream 708698 19563246 ~ 19565919 (+) True G176225
TU238530 lncRNA downstream 712391 19566939 ~ 19567169 (+) True G176226
XM_039778931.1 mRNA upstream 16412 18772640 ~ 18834666 (+) True LOC120545005
XM_039778930.1 mRNA upstream 30576 18772640 ~ 18820502 (+) False LOC120545005
XM_039778926.1 mRNA upstream 78881 18752044 ~ 18772197 (+) True cplane1
XM_039778932.1 mRNA downstream 4720 18859268 ~ 18864887 (+) True opn4xa
XM_039778933.1 mRNA downstream 4720 18859268 ~ 18864887 (+) False opn4xa
XM_039778934.1 mRNA downstream 4720 18859268 ~ 18864887 (+) False opn4xa
XM_039780058.1 mRNA downstream 13805 18868353 ~ 18905862 (+) True pdlim5b
XM_039780059.1 mRNA downstream 13805 18868353 ~ 18905862 (+) False pdlim5b
TU238143 other upstream 127293 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 164350 18676044 ~ 18686728 (+) False srsf9
TU238154 other upstream 164350 18676044 ~ 18686728 (+) False srsf9
XR_005636603.1 other upstream 302937 18536631 ~ 18548141 (+) True myo1hb
TU237773 other upstream 773576 18076239 ~ 18077502 (+) False LOC120545364
TU238450 other downstream 525729 19380277 ~ 19387442 (+) False LOC120545529
unassigned_transcript_963 other downstream 662687 19517235 ~ 19517306 (+) True trnac-gca_32
TU238926 other downstream 2092136 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 3424332 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 3641865 22496413 ~ 22524368 (+) True LOC120545252

Expression Profile