RNA id: TU238449


Basic Information

Item Value
RNA id TU238449
length 3198
lncRNA type sense_over
GC content 0.40
exon number 1
gene id LOC120545529
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19380250 ~ 19402379 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATTCTGTTACCATAAATACTCTGCTGAAACATCCAGCTAATTTTCAACCCAGTGAGGAGCTGCCCTATGCCAAACTGTTCATTAACTGTAATTTCTCTCTCCTCCAAGTTTTGGTGCTGCTGCAGACAGATCATACCGGTTACTATTGCTAATATTTCTTATATTTCACTCATCTCATGTGGAGCTGCATCTTTTTGGTCTAGAGCCCAAGTATCACAACCCAGTTAATACGACCTGTTTTACCTGTCTACTTCACATAGTCGACCCTTATAGAACACCATGGCACAGTTACAGCCAGGTTACACTACAAAAGAAGGGGATCGGATGACATGTTGTCGACACTGGAAGGCGGCATTGTTTAAATATGGGGATCAAAGCCATCTCTCCTGGAAAACCTTCAGAGTGTTGCGCTTGGTTGCTCACATTAAAAGCGACAGAAATAGAAAGTGCCAAGAATGAAAAAAGAGAGCTAGAGAGAAGCTCAATACCTTGCTCCTTTCTCACCTCCACACAGCTGGCCAATCACCGTGTGAGGTGGGTGTGAATGTCAGTTTTTGGTAAGTTATAGAACTTCTTATCTGACGTCAGAAAAGTGTGGAGGGAGGGGGTTTCTGAAGCTATTAGACCACCACTACCTCCACAATGTTCAAAACTTTGGTCCAACACTAAGATAATGgctatgtttttgtaaaaactgGGTTGAATGTTACTAATGTTAAGAGATTGATTGCATTTTGATGGATTATAAAGCCTCATCATATTTGTTTGTGGCTAACTCTGTTTACCGCTAACAAAGTGGAGAGGTTCCAGTGGTTTGATAGTTGAATCGCATCTGTGTTTTCTCTGCCTTCAGTCCCACTCTGATGAAATCTGTTTAACCACATGTGTATAGTTGCTTGTTGGCAGTTTGACTCCTCTTATATGTAATCATAGGTGGCATCGGTTTCTGAGGACATGGGAAATTGTTTGCACTTGGGAGATCGACTGAGCAAAATCATCTTTTGTCCCCTTTGTGTGATCCATGTTGTCCGTTTTGGCTTCAGTCACACATAATAACAAATGCTGACATAAAGGAGGCCTTAACATTTCGCTTCCAAAGACACGTCAAATGTTCACTGTTGTGGACACTAACCTCTCAGTGGTCTTAAAGCTATCAGGTGCTGCACTGTacagtgtgtttttatgtatgtgaaTCGTTGTCCGTTGGGGAGTTTGAACTTAAAATCAGCCTTCGACAGCACTTGGCAAGTAAAGAAGATATCGTCCTACTATGCTCCTTCTTTAATGCACAATGTGTAACGAGAAGTCCTTAAAGTACTCTGactccatctgctgaggaagatAAGTGTGATACAATTAAAAGCTCCAGAGCAGGTgagattgtttttgtcaaaaGCCAGATGATCATATCAGCTGACCGCAGTATGAAGACATGGCTGACCTCAGTGTCCcttcaaaaaagtaaaatatcaaaTATATCAGACATCTGCTCAATTTAATTGGCTGGTGAAATTGTCAACAACGTAGAGATTTTATACCtttataacagtttttttttttttctttttcaaaatggATTCAGCTGGTTCGTATTTCCACAACATAACAGTTTATTAAAAGACCACTAGACttgtttttacataaaacatgaaatggAATAATAGTGATGAATAACAACAGGTGCGTTTGTTTCTATAAAAGCACGAAGACGGGAGGAACTGCTGTAAATGTGGGACGCAGCAGGGAGGTGTCGGACTTAAAAGCTGTGAAATTGCTCTTTCCGACGCAGTTGGTGCTCCCACTGTAGACTAAAGCGTACACCGAACACTGCTAGAGCTTAAAATAGGAAAAACACGCTGCTTTTAGAATGACGTGAAATAAACTAGTTTTTGACAGAATCTAATGTCTTAATGTAAGACTCAGAGGCTAACCAAGCGCTGTGCATTGTGATTTTTGTTAAGTGTAAACTCACTCACAGATGTAGCTTTATCGTCCTCACATGTTAACAGTCAGTCAAGAAAACCAAATCAGTCATTCACACAAATATTCATATCAGCTGGAGAAATTAGTAGTTTTAGCTGAAATCTATTTTGGGATATATACATTGAAATGTCTTAATGCCTGTTGTTGAAggatgtccttttttttttttaagatgtttaatttgttaagtTTTTTAAGGGTTAcctatactgttttttttttgtccaacatCTTAACTTTTCACCAATGCCTATTTTTGTTACTGTTCACTTTTGTTCTGAAAGttcaattgtttttttccaagACCGATCATGATGTTctttttttgattgatttgacattttaaaaaggtcctgaacacccacacaggtgttttcagtttttatctggctgattagacctcttcccaggactgcGGGACGTGTCTATAGACTGACTGATCGACATCTTCCTGAATTTCTTGTTTCTTTgctttgttgcacctgttagaGCAAGACTAGTCTATAGGTGTTTCTCAGGtcgcttaaattgcctcctcgactcctccacttgccaCTCTTCCTCGTGTCTTagtcccccacccccccatgaGGCATGGGAGAGACGCAAGGAAATAattggaggagagaggcaacgaggAAATGcgtttttagagggatgagggCGTCCTTCGCCCAACTCGACTGTGAACGTACACAtggtccaccaaaacaagttgcgacccgaggctattttgcagaggcgctgtTGCTCCATCCGGCGCATAGCGCcgtccatgacgattgtgattggtttaaagaaatgccaatgaaccagagcacgtgtttctcccatcccggagtgCTGTGGGGAGTAGAGACTAGGGCAAGACAAATTACAGCTGTATCAACTTATTGGTAGAAaagatttgtgacctaataaatTCCCATTGAAGCTACGACCCACCTTCAtcctgagcagaggtctaatgGGCCAGAATCAGTGAAATCACCGGTGTGGGACCGGTCCGAGACTTTAAATAACTCCTTGaactgctgttttgttttttaaattgcataTTTGTCAATTGAAATTTAATGATTGTTATGACTGTTGCAATTGGGAATATTGGGATTTCTGTTATTACAGGGTATCCATCTATTGAATGGATGGGATGATTTTACATTATGCAAAAATCTTGTATTAAATTAGTACTTCTACAGCAATTAAAACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238220 lncRNA upstream 544622 18851078 ~ 18854548 (+) True G175973
TU238221 lncRNA upstream 562416 18836175 ~ 18836754 (+) True G175974
TU238139 lncRNA upstream 712442 18676044 ~ 18686728 (+) False srsf9
TU238127 lncRNA upstream 725205 18670383 ~ 18673965 (+) True G175925
TU238118 lncRNA upstream 740886 18657690 ~ 18658284 (+) True G175917
TU238472 lncRNA downstream 85943 19488310 ~ 19492082 (+) True G176173
TU238477 lncRNA downstream 93669 19496036 ~ 19502184 (+) True G176177
TU238529 lncRNA downstream 160879 19563246 ~ 19565919 (+) True G176225
TU238530 lncRNA downstream 164572 19566939 ~ 19567169 (+) True G176226
XR_005636770.1 lncRNA downstream 188375 19590742 ~ 19593712 (+) True LOC120546000
XM_039780434.1 mRNA upstream 76931 19318972 ~ 19322239 (+) True mlana
XM_039780433.1 mRNA upstream 76931 19318977 ~ 19322239 (+) False mlana
XM_039780486.1 mRNA upstream 124537 19273397 ~ 19274633 (+) True LOC120545863
XM_039780161.1 mRNA upstream 185705 19195656 ~ 19213465 (+) False rfx3
XM_039780159.1 mRNA upstream 185705 19195657 ~ 19213465 (+) True rfx3
XM_039778900.1 mRNA downstream 39209 19441576 ~ 19447599 (+) True exosc2
XM_039778896.1 mRNA downstream 47196 19449563 ~ 19486106 (+) False abl1
XM_039778897.1 mRNA downstream 47196 19449563 ~ 19486106 (+) False abl1
XM_039778898.1 mRNA downstream 64684 19467051 ~ 19486106 (+) True abl1
XM_039778899.1 mRNA downstream 64686 19467053 ~ 19486106 (+) False abl1
TU238450 other upstream 11728 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 675385 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 712442 18676044 ~ 18686728 (+) False srsf9
TU238154 other upstream 712442 18676044 ~ 18686728 (+) False srsf9
XR_005636603.1 other upstream 851029 18536631 ~ 18548141 (+) True myo1hb
unassigned_transcript_963 other downstream 114868 19517235 ~ 19517306 (+) True trnac-gca_32
TU238926 other downstream 1544317 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 2876513 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 3094046 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 3129541 22531908 ~ 22537337 (+) False G176870

Expression Profile