RNA id: TU238450


Basic Information

Item Value
RNA id TU238450
length 953
RNA type TUCP
GC content 0.52
exon number 6
gene id LOC120545529
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19380250 ~ 19402379 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGAGAGCGACGCTTTCAGCTCATGTACCGCTGGCTCAAAGATGGAAAGCGACACCGCTGTCAGGAGAATAAAACCCTTCGGGACACAGAATTATGTAGCGCAAGATAACGACGGTTCCCGGGGCCGGTGGGGGGATAACGGTTACAGCGATGACCCGAAGAAGAAGCCCGAAGTGAGCATATATTTGCTGCGGGAAGGGCTTGCAGCTTCTCTGGTCTCTGtgtttattttggtgctgtggGGACTTGTTCATTTGTCGTTACAGCAGCTCGTCATTGGGAACCCAACCGGCGAGTTCAACGCCGGGAGAGCCAGGTGCCAGTGATGATGCAGTGAGCTGTGCAGTGATGCTGGAAGTCCTCCATTCTCTGGCCAATCAGTCTACTCCTCTCCGTCATGGAGTTATCTTCCTTTTTAATGGGGCAGAGGAAAATATCCTTCAGGCCAGTCACGGTTTCATTACTCAGCATCCGTGGGCCAAGCAGGTGCGAGCCTTCATTAACTTGGAGGCTGCAGGTGTTGGGGGCAAGGAGGTTGTTTTCCAGACAGGTCCAGAGAATCCGTGGCTGGTCCAGGCCTACGTTCACGCAGCCAAACACCCCTTTGCCTCTGTGGTCGGCCAAGAGGTCTTTCAGAGTGGCATCATCCCCTCTGACACGGACTTCCGCATCTACAGGGACTTTGGTAACATCCCAGGCATTGATCTGGCTTTCATTGAAAACGGTTTTATCTATCACACCAAGTATGACACTGCTGACAGGATCCTGACAGACTCGATACAGAGAGCAGATTCAGCGCATGTTAGCTGGTGGGTGTGTCTGACTGTCAAGGAGAGAGCGGTCACTGCAGCAGTAGACTGGTGTGGTAGAAACAGCTGCCAACGTTGTTTTTCTGtcacagagaaaaaaacacatgctcACCCCCAGTTTCAGACTGGTGAGCACTCTGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238220 lncRNA upstream 525729 18851078 ~ 18854548 (+) True G175973
TU238221 lncRNA upstream 543523 18836175 ~ 18836754 (+) True G175974
TU238139 lncRNA upstream 693549 18676044 ~ 18686728 (+) False srsf9
TU238127 lncRNA upstream 706312 18670383 ~ 18673965 (+) True G175925
TU238118 lncRNA upstream 721993 18657690 ~ 18658284 (+) True G175917
TU238449 lncRNA downstream 11728 19399170 ~ 19402367 (+) False LOC120545529
TU238472 lncRNA downstream 100868 19488310 ~ 19492082 (+) True G176173
TU238477 lncRNA downstream 108594 19496036 ~ 19502184 (+) True G176177
TU238529 lncRNA downstream 175804 19563246 ~ 19565919 (+) True G176225
TU238530 lncRNA downstream 179497 19566939 ~ 19567169 (+) True G176226
XM_039780434.1 mRNA upstream 58038 19318972 ~ 19322239 (+) True mlana
XM_039780433.1 mRNA upstream 58038 19318977 ~ 19322239 (+) False mlana
XM_039780486.1 mRNA upstream 105644 19273397 ~ 19274633 (+) True LOC120545863
XM_039780161.1 mRNA upstream 166812 19195656 ~ 19213465 (+) False rfx3
XM_039780159.1 mRNA upstream 166812 19195657 ~ 19213465 (+) True rfx3
XM_039778900.1 mRNA downstream 54134 19441576 ~ 19447599 (+) True exosc2
XM_039778896.1 mRNA downstream 62121 19449563 ~ 19486106 (+) False abl1
XM_039778897.1 mRNA downstream 62121 19449563 ~ 19486106 (+) False abl1
XM_039778898.1 mRNA downstream 79609 19467051 ~ 19486106 (+) True abl1
XM_039778899.1 mRNA downstream 79611 19467053 ~ 19486106 (+) False abl1
TU238143 other upstream 656492 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 693549 18676044 ~ 18686728 (+) False srsf9
TU238154 other upstream 693549 18676044 ~ 18686728 (+) False srsf9
XR_005636603.1 other upstream 832136 18536631 ~ 18548141 (+) True myo1hb
TU237776 other upstream 1302775 18075032 ~ 18077502 (+) False LOC120545364
unassigned_transcript_963 other downstream 129793 19517235 ~ 19517306 (+) True trnac-gca_32
TU238926 other downstream 1559242 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 2891438 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 3108971 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 3144466 22531908 ~ 22537337 (+) False G176870

Expression Profile