RNA id: TU238477


Basic Information

Item Value
RNA id TU238477
length 444
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G176177
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19496036 ~ 19502184 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGATAATGATGTACTTGAAAATGTAGGAGTAGTTGTACGGTGCAGTGGTCATTGTGGctCAGAAAGTCTTTTGAGCTTTGTGTTCTTGAGCTGTTTAGAAGAGGAATGCAGGTTATCCTGGCTCAAGTATGATCAGTCTATCCAAGATGGCTGCTCACGGCACATAATAACGCCACAGGGTTTCCTCCGCTGTGTACAATGGGCTTCTGGGACAAAGAGCATCATATGCGGCGATTTGCGGTTGCGGTGTGTGCACTGTTTCGCGGAAAGCAACCTTACCTGCACAGGTGTAttcatacatactgtactggTATACCACTTAATACTGGCATGTGCCCTATCAGATTCATTTTCAAATTGATTACACCTGATTACATAGCCTACCTTGATTGACCTGGGTTCAGATACTACGCAAAGGTAGCCTACATTTTGAAGAAGACCTAG

Function

GO: NA

KEGG:

id description
ko00590 Arachidonic acid metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238472 lncRNA upstream 3954 19488310 ~ 19492082 (+) True G176173
TU238449 lncRNA upstream 93669 19399170 ~ 19402367 (+) False LOC120545529
TU238220 lncRNA upstream 641488 18851078 ~ 18854548 (+) True G175973
TU238221 lncRNA upstream 659282 18836175 ~ 18836754 (+) True G175974
TU238139 lncRNA upstream 809308 18676044 ~ 18686728 (+) False srsf9
TU238529 lncRNA downstream 61062 19563246 ~ 19565919 (+) True G176225
TU238530 lncRNA downstream 64755 19566939 ~ 19567169 (+) True G176226
XR_005636770.1 lncRNA downstream 88558 19590742 ~ 19593712 (+) True LOC120546000
XR_005636769.1 lncRNA downstream 107487 19609671 ~ 19661055 (+) True LOC120545999
TU238548 lncRNA downstream 191922 19694106 ~ 19694338 (+) True G176240
XM_039778896.1 mRNA upstream 9930 19449563 ~ 19486106 (+) False abl1
XM_039778897.1 mRNA upstream 9930 19449563 ~ 19486106 (+) False abl1
XM_039778898.1 mRNA upstream 9930 19467051 ~ 19486106 (+) True abl1
XM_039778899.1 mRNA upstream 9930 19467053 ~ 19486106 (+) False abl1
XM_039778900.1 mRNA upstream 48437 19441576 ~ 19447599 (+) True exosc2
XM_039780631.1 mRNA downstream 14626 19516810 ~ 19525324 (+) True ddx54
XM_039779419.1 mRNA downstream 391932 19894116 ~ 19900260 (+) True lman2la
XM_039779421.1 mRNA downstream 409686 19911870 ~ 19914680 (+) False LOC120545241
XM_039779422.1 mRNA downstream 409686 19911870 ~ 19914680 (+) False LOC120545241
XM_039778791.1 mRNA downstream 427387 19929571 ~ 19943843 (+) True pax8
TU238450 other upstream 108594 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 772251 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 809308 18676044 ~ 18686728 (+) False srsf9
TU238154 other upstream 809308 18676044 ~ 18686728 (+) False srsf9
XR_005636603.1 other upstream 947895 18536631 ~ 18548141 (+) True myo1hb
unassigned_transcript_963 other downstream 15051 19517235 ~ 19517306 (+) True trnac-gca_32
TU238926 other downstream 1444500 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 2776696 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 2994229 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 3029724 22531908 ~ 22537337 (+) False G176870

Expression Profile