RNA id: TU238592


Basic Information

Item Value
RNA id TU238592
length 417
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G176284
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19805199 ~ 19805615 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTTCTTCCCTTTCCGTCTTTACTGCTCCCTCTTCCCTTCTAGTCATTCCCCCTTTTCACTCTGAGATGTGATAAAAGACTGTGAGGGTCATTGCAGCCAAAGTATACTTCAATAGCACCTCATCTACTACTACCTCAGCTCGAACTGCCTACATGGAGACAGAGGGTTCCACGCTCTTTTAAATCCaacagacatgttgactttttCCATACCTACGATGACCTCCAGTGCCGCGTGACAGTTGCGATTGTAGGCTTGGcttgcttcttctttttccttttccccaATTCCCTGTTTCTGCTGAAGTACTATAGGGTAGAAGTAGCTCCACTCCTCCATCAGCTTCCTTGCTGCCGGGTCACTCATTTTGTAAGCCTGACCTGTTAGAGTGCCGCTCAGACCATATGGACTTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238591 lncRNA upstream 1603 19802546 ~ 19803596 (+) True G176283
TU238590 lncRNA upstream 2668 19802240 ~ 19802531 (+) True G176282
TU238589 lncRNA upstream 4000 19800983 ~ 19801199 (+) True G176281
TU238551 lncRNA upstream 107129 19697844 ~ 19698070 (+) True G176243
TU238548 lncRNA upstream 110861 19694106 ~ 19694338 (+) True G176240
TU238594 lncRNA downstream 44075 19849690 ~ 19849905 (+) True G176286
TU238595 lncRNA downstream 62203 19867818 ~ 19869547 (+) True G176287
TU238598 lncRNA downstream 78372 19883987 ~ 19906123 (+) True G176289
TU238605 lncRNA downstream 83254 19888869 ~ 19892779 (+) True G176292
TU238611 lncRNA downstream 106221 19911836 ~ 19914662 (+) True LOC120545241
XM_039780631.1 mRNA upstream 279875 19516810 ~ 19525324 (+) True ddx54
XM_039778896.1 mRNA upstream 319093 19449563 ~ 19486106 (+) False abl1
XM_039779419.1 mRNA downstream 88501 19894116 ~ 19900260 (+) True lman2la
XM_039779421.1 mRNA downstream 106255 19911870 ~ 19914680 (+) False LOC120545241
XM_039779422.1 mRNA downstream 106255 19911870 ~ 19914680 (+) False LOC120545241
XM_039778791.1 mRNA downstream 123956 19929571 ~ 19943843 (+) True pax8
XM_039778796.1 mRNA downstream 123956 19929571 ~ 19943843 (+) False pax8
unassigned_transcript_963 other upstream 287893 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 417757 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 1081414 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 1118471 18676044 ~ 18686728 (+) False srsf9
TU238926 other downstream 1141069 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 2473265 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 2690798 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 2726293 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 3200652 23006267 ~ 23008812 (+) False klhl8

Expression Profile