RNA id: TU238595


Basic Information

Item Value
RNA id TU238595
length 1730
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G176287
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19867818 ~ 19869547 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGTAGAGAGGAAATATGGTGGGTTTTGGACCATTAACCTGCCGTGTTAATGATTACCCAATAACAACATCAGCAATGGTTCACCTTTGTACAGCAGACACACGTTTAAGCGTGCCTCCCACGGTCTTTTGACTTGTCAATCACAACTGGCTCGCGTGTCTTTGACGAGCATGATTTATGGATACTGTAGCCTACCAGAGAGAAGATGTTGGAGTGGCAGTCCTCAAGGCTTGCCCCGTTAGCCACCCAATTCGCTGTTGTAGTCATAATCGTCCGCCGTTGGGGTCGTCAGCGCTGGGCATGTCGAAATCCTACATCGGTATCAAACACCGAGCAGGGCTGACAAATCGGTTCCCGTACGAGTCTGCCAAAACAGGCAGGCTTATAACCTCACAAGAGGTCCAGATAATAGACTCGGGATGGTCAGGCAGAGGAATGGGCGTATTTAAAAAGAAGTGCAGAATGTATCCATGAAGCCCCAGCGGATATAACGTTGTAGGCTAATGTAAATCCAAGCGTGTGTGGGGAATCAAAACATTGTTACAAAGCAGGTCAGGCGGTTCCAAATGTGAGCATTGTCAAAGACGGAGCGCACACAAATGTATCCATTTCAATCAACACACAGAGGAAGATCAGCCTGTTTCCATATCAATCTTTCCGCTGTTAGTTTCATCATTAAATGAGCATAATCCATGGGGAAAAGACTTTTCTTCCGCGCCGAGGAACAGTTCCAAAAAAAAAGGCGAAATTAAGAGTCAAAActtcttttaaaaatatatatatatcacacgtTCGCCGCTCTGCAAAACAATTAAGAGATCTTACATGCAGGATATCTGATTCCGTCTGCTCCACAAGCTGATGCACCACTTGTGATAGTTTTCGAGAATTGCATGAGCTATTTATAGCCTTCTTTCTTACCACAACCGTTCCTCTCACAATGTAACCCAGTCTGCCTCACACAAAACAGGCGCTGCGAAGAGGAATGTGTAATCCCCTCTGTTGCTCTTCAATTAAACGGACCGCAGACGAAGGGTCGCTGAAAAAGAAAAGCCCCCGGTGCTCCTCTGTGGCAGGGCGGACAAAGTCGCGCGGGTTCCCATGTAACCCCGAAGCATGAGTCAAAGCGTTCAGACAAGAAAAACTATTCTTATACTCCACCACCAGGAAAACGACAAGCAGGCTTCTGTAGACCgaggtttgaaaaaaaatccttccttcctttcagtTTTATATCATTACGAAACGTCCTCTCGCGGCCACAACAGCCTCAATGTTGCACAAAAAAATTAtcagatttgtttgtttttttaaatgcacagTTCAAGCAAAAGTGACAGTCCTTGTCTGGCGCCGATCATTGACATAAAGAATATTTTGCGTGCTGCAGAGTGTTTTTCTTTATAAACCACCATGACATTTAAAAGCGAATCTTCCTCCTTCTCGGGAAATGATTTGATTATTGAATTAAATCCTCAAACATGTGCACGGTTTCCTCAGCGGCGACTCCTTTTCCTCGTTGTATCTCTCGGAGCGTGTTATTATAGGCTATCGGTACATAAGTGTGCGTGTAGCTGTAGCCTGAGCGTGTCATCCTCaccctctgtgtctgtttgcttTACGCCAAGCGCCGCTGTAGCATTTTTTCGCGCACGATGGTCCAGCCCACCACGCAATGCAATGTAATGGCGGTCGGAAAGCGTACTACCCATGGTAGGTTACTACCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238594 lncRNA upstream 17913 19849690 ~ 19849905 (+) True G176286
TU238592 lncRNA upstream 62203 19805199 ~ 19805615 (+) True G176284
TU238591 lncRNA upstream 64222 19802546 ~ 19803596 (+) True G176283
TU238590 lncRNA upstream 65287 19802240 ~ 19802531 (+) True G176282
TU238589 lncRNA upstream 66619 19800983 ~ 19801199 (+) True G176281
TU238598 lncRNA downstream 14440 19883987 ~ 19906123 (+) True G176289
TU238605 lncRNA downstream 19322 19888869 ~ 19892779 (+) True G176292
TU238611 lncRNA downstream 42289 19911836 ~ 19914662 (+) True LOC120545241
TU238670 lncRNA downstream 185742 20055289 ~ 20061984 (+) True G176346
XR_005636606.1 lncRNA downstream 199213 20068760 ~ 20069830 (+) True LOC120544937
XM_039780631.1 mRNA upstream 342494 19516810 ~ 19525324 (+) True ddx54
XM_039778896.1 mRNA upstream 381712 19449563 ~ 19486106 (+) False abl1
XM_039779419.1 mRNA downstream 24569 19894116 ~ 19900260 (+) True lman2la
XM_039779421.1 mRNA downstream 42323 19911870 ~ 19914680 (+) False LOC120545241
XM_039779422.1 mRNA downstream 42323 19911870 ~ 19914680 (+) False LOC120545241
XM_039778791.1 mRNA downstream 60024 19929571 ~ 19943843 (+) True pax8
XM_039778796.1 mRNA downstream 60024 19929571 ~ 19943843 (+) False pax8
unassigned_transcript_963 other upstream 350512 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 480376 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 1144033 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 1181090 18676044 ~ 18686728 (+) False srsf9
TU238926 other downstream 1077137 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 2409333 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 2626866 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 2662361 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 3136720 23006267 ~ 23008812 (+) False klhl8

Expression Profile