RNA id: TU238849


Basic Information

Item Value
RNA id TU238849
length 1991
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id LOC120545557
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 20497822 ~ 20499818 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgctatttttattctttactctatttttatatttatcatTCTAATTTAAACATATTTCTATTTTGAAGCAATAAGCTTCAAGGGCATAGTTTCAATTGTTATCTACTAAAAATGACTGTTCTCATGACGCTCTTACAGTTAATCATCATTAATGGTaaattattttctgtttgtgaAATCAACGGGATTTTCTCAGGAATGAGTGCACCCAAGCAGGCGCCACCACTTTTTCCCCTTACTCTACTGAAAACCCATCAAACTTTGACCTCAATACCGAGGTATGTACTGAACCGTGACTTTTGTGAAACGTTCCACCCCAAATGCAGTTAGTGCCATTTGCAACAAACAAAATGGATCAGggtgaggtttttttttctttcttcaaggATAAAGCAAATTCTGCCAGTACATTCACTAAAGTCAACAAATGCATACTAATAAAgttaagttatttatttattttatggattctAGTATACATTTACACAAGCTAATACCTCCTGTAATGACTTGGATGAATGACAGTTATACTGTAAATTTGTTTGTTGCCTTTGGTACTAATTAGTCAAGTTTAGTCAAAGTTTCTTTCATGCAACCACCTTAAACCCTACAGTCAGAACCAACACCATGCCTTTTTATTGATGTTAAATGGCCTTGTTTTCACCATGCTTTCTAAAGCTTGTAGTTTGGTTTTTCACTCCTGTAGACCCAAAGGGACCTCTGGCTGATGATGTTTGAAACCGTGTCCTCTAGTGGTCAaatgtggactttttaaaaCATCATGGACAACTGGTATTTGACAAGTGCTTTATTCCAAAGTTCAAGTCACCTCTTGGGTATAAACAGGTCAGGAATTATTTCAACAATAACACAGCCAAGCACAAGTATCCATTGTATTAAACTATACTGAAAACCTATACTCAGTAGGTCAGCTCTTCATTGTGTTCATACCAGAGCAGGAAAATGTATCAATACTGATATTGTGGTATGAGACTCCCATTTGGATTTTGTTCATGTTAATATTTGTGGTGCAGCTTAAATATCGTCTTTTAATCCAAAAGGATGTAGTTCAGTTATTTGATTTGGCTCCTCCACATGAATTAAAAGTTACATCATACTCTTTCAgtcattaaattaaatattaaacacAAATGGTCATAACTCAAAATATCaactgtaaaaataaacattaactatatttttttctcaatttttcCCAGCTTTAGGCCACAGTACAACTTAAGGTACAGTCACATTACACTACAATGAATATTCACTTAgtctcccattcattttctattGAATTTGACAAATTCAAACATCCATTTCCTGTGTCCGTATGAACTCCATGGGTCAGAGTTCACTTTTGTTCAACGTTTACCTCACAGATGTGCACGGTCGGCCAGTAGGAACACTGATGAACTGTACTTGGAAATGGAGGAGTCACTATTCTAGCCCTGTGGCGCCACCTTCTTTTGTGCAACACCAGACTAAAAACTGCTGCATCTCCCTCATAGACGGTTTACAGTTAGTGATCGCTCtgatcaacatttatttataatcaTGGTTAGAATTGTGACATGTCCTTTTTAGAGGCTGAGTGCAGGGCAATTTTGTTAAATGTGACTGTACCTTTTAGTTTCTAGGCCACAGGAAGTAGGAAGTCAGTACACTGCACATTGGGAATTATAGGGCATTTGAGTGAATGGTTTGCAAAGTGTAAAGCCAAGAACagacaggtctccctaaaatgCAAATCTTTTTAGTCCACCTGAATGcagttgtgtcatttttaagtTATATAAGAACATTTGTCAACTTTTTATTACAAATGCATTAAAGGTTGAAAATGCTTGAATTATGTCTGTCAATCAAAGGTGAATGGCTCTTGCAAACTACAATGTTTTGATAGATTGTTGCCCTCCTTACCTCCATTTACAGCTTTGATTTAGTGTTTCATAAATGCTTTTCTCTTCTTTAAAGTGATTGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238842 lncRNA upstream 57262 20437171 ~ 20440566 (+) True LOC120545553
XR_005636708.1 lncRNA upstream 57488 20437171 ~ 20440340 (+) False LOC120545553
XR_005636709.1 lncRNA upstream 57488 20437220 ~ 20440340 (+) False LOC120545553
TU238769 lncRNA upstream 256612 20237527 ~ 20241216 (+) True G176410
TU238681 lncRNA upstream 406970 20089106 ~ 20090858 (+) True G176357
TU238868 lncRNA downstream 648 20500466 ~ 20501824 (+) False G176477
TU238866 lncRNA downstream 856 20500674 ~ 20502348 (+) True G176477
TU238872 lncRNA downstream 116218 20616036 ~ 20617718 (+) False pappaa
TU238899 lncRNA downstream 436988 20936806 ~ 20937292 (+) True G176507
TU238944 lncRNA downstream 651449 21151267 ~ 21154855 (+) True G176542
XM_039779998.1 mRNA upstream 61 20458356 ~ 20497767 (+) False znf618
XM_039780440.1 mRNA downstream 15529 20515347 ~ 20620786 (+) True pappaa
XM_039780441.1 mRNA downstream 15529 20515347 ~ 20620786 (+) False pappaa
XM_039779630.1 mRNA downstream 196234 20696052 ~ 20701783 (+) True trim32
XM_039778767.1 mRNA downstream 961308 21461126 ~ 21472938 (+) True lhx3
XM_039778766.1 mRNA downstream 964531 21464349 ~ 21472938 (+) False lhx3
unassigned_transcript_963 other upstream 980522 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 1110386 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 1774043 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 1811100 18676044 ~ 18686728 (+) False srsf9
TU238926 other downstream 446866 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 1779062 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 1996595 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 2032090 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 2506449 23006267 ~ 23008812 (+) False klhl8

Expression Profile