RNA id: TU238944


Basic Information

Item Value
RNA id TU238944
length 3562
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G176542
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 21151267 ~ 21154855 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCTTTTAATGAGAAATAGATTATTATATGAAACATTCATTTGAAATAAGCTGATATAATGATCTTAACAGAACAGCAAAAAAGTACATAGGCAAGGTATTAGGTGTAAAAATCTTGAGACATCCATGGATACATGTAAGCAACACTGTGGTAGCATAATGCCATATGATAAAATGTGCTTGTTTTATGGACCTTGCAGTGACTCAAAACTAAAtcgtaatgtacagtatgttttgaCAAAATTTAAACACAGTCATACATTGTCATGAATCTAATTAGATACATAAGACATGGGTGCCCTCTACTTTGTGCTGATGTACTCAAATGGAGGGCTTTTTTTTGAAGTAGTCTTTGTATTCCCTTTCAATActgttatatttttataatattgtTACTGTAGCAGAGCATTGTTACTGTAACAGAGTTAATATTTACAGATATATTGTACAACAggggacaaaaaataatatcaacCATTACTTTAAGTCATCTTTTGACCCTCTTTCTGGTGGTTGATTTCCCCACATGCACAAACCCCCTGTAGTTCTTAGGAGCAGATGAAAAGTGTATATTTGATCATCACTTATGGTCTTAAATTCTGTAGCTAATTACGTGTCACTCTGTaacatctgtgtctgtgtaacaTCTAAAAGTATTCTCCAGCTTTAAACATGTTAAAGGGATAGATAACAggcacttaataataataataataataacaacaataataatcataataatcatgATAATAAGGTAACAATTCATTTGGAGAGTCCAATGTTAATGCTGAACAATCAAGTCCCCTTTTTTTACAGCATCTCAATTGATTACAGTGGGCATCTATCGTGTGGCCATCTCTGTCTCATTATAGCTTCAGTATGTCAAAGTCAGCTCTGCATCAAATAAAACTAATTCATCGGGAGGTACTGTTAGCATGCACATGTTACAATGACAATGTTATGGATACTAACATATTTGAAAAAGTCTACCATGTTAACATTAACATGCTAATTAGCTCAAAATACATAACTGGGGCTAATAAACTACAATACCAAGGAGCTTTGCGACAGCTTGCAGCTACTATCTACACCCAAGCAGATGCACTGGTCACGATACAGCACATTTAATTTGTATCCACCGGTCCAGATGCCCTCTTTCCCTCTTGCTGCTGCTTACCTCATGGCAGTAGTGCCATCCTATGCAAACTGGAAACAATAGCCCTGCAGAGGTATCTGCTCACTCACTAAATGCACCTTTACGGATGTTGGGCTATTAAACTGCGGCTATAGACTGATGATAGTCTTGTACTGTGAGATCAATTTGACAACACAGAGCTGAGCCTGACAACCTGAGCCTCAGTCGTCCTGAACCGGCCACCACATTCTGTATGCGCTAACCCATACATTAGTGAATTATTTTGCTGACTACTGAATCACCTGATATTGATTAGATTTAAGTGACTAAGTTATTATTGATGAAGCACCTCTCAAGAGTaaaaagtgcttcacaaaaagACTGACAACAGTAAAATAAACCATAAGGATAATCATCGCCACATGAAGCCAGACGTGATTCTGTTGGTTACATCATGACAAGAATGCACATCTAGAGACAGCTATTAAGGTTGTAATCGTGGATGCAATTAAATATGCAGCTGACAAAGCGATTTctataagaataaaaaaacaggtgTTGTTCCAGAGCCGCTGTATTTTCTTGTGTAAATCCAACCCGACATGGTTGTTCCCAGATATATTACAAGCCTCTGCTTACAGCTGACTCCACAAGACTAGTCTAATCACAATTTAAAGTAACAATAATTATTTAGAacacaaaattaaacaaaaaatagcAAGGCAACCAAACTTTATCTACAGTAAGAGACTAACagacataaaataaatacatacatggaaaagttttaaagtgctcatattatgctcattttcaggttcataattgtatttagatgttatatcagaataggtttacatggtttcattttcaaaaaacaccatatttttgttgtactgcacattgctgcagctcctcttttcaccctgtgtgttgagctctccgttttagctattGAGTGAAGCATCTCATTTCtgttcaatctttgttgggagtcgcacatgcacagtagctagttAAGGACAATTAGCCATTAAGAaccagagtatgagggcgtgccacgctagcagctaggcgagcattataacgtgtgttacaaagtgacgcacgtttgtcaccgaagtaaaggctggattataacagagctgtttggagcagtttgtgaacagtgttttctgttggagatggtaaatcCCTTAGGGGTGGACTTTGAGCTTTTTCACttataaacctataacatgcactaaaaagatatataacacatacaggaaagggaaaaagccaaaaagcacaatatgagcactttaagatgcTTTTCTAAAAGCTTGCAACTGGCTGTCAGGTTTTACACTGGGAGGAACGTTTTTCCAGAGTTTGGGAGCCATGGCAGCAAATACTcctcttttttaaattcaaaccCATCAATGAGAACAGCTATAGGTTGTATGACATGAGTGAACTTGCCTCTGTTGTTGTTAACAAACATGCAGGTAATGGACTGGACCTACAAATATTCATCAGCAATAGCAATGTTTCAGCATCAGATTACCCAAATAAAATGTGACCAACAATACATATAGGTAGTGTTTCATATTTCAGTTAGATGATTGAGAGTGTTAAACACAGTTGCAGCTCTGTTGATGTTTCCAGCAACATGCAAAACAAGGTTAAATTTCATATCTAGAGAAAAAAACTTGATCTTTACATGTGGTCATAAAAAGCTTACAGATTAAACACCGCCAAAAAGGTATTTTAAGCTTTAATAtaaccatttctttttttcctttttttttttcctgtggcACAACAGAGAAATTCAATGGCTTTACAACACAATTCTTATCCAACATAATATGCCTTTTCTTGTCATCTCCCTTGTTGCTGTGCTCTTATCTAAAAACCGagactataaaataaaaacattcaaatggaACATTTTTTTATGTACGTACTTTCGTGAAATGGGGATGAACTTTATGTCTTACTGTATGTCTACCTCAGGGAAGTGTATGGCTTTAAGTTGTCTTGCAAATGTGCCTGGATGAAGAATGTTTACATTTTGCTCTTGGTGCTGAAAAGCTCCACAAATCAGCAGTCACAACATGTACATTTTGCAAAGCTGTACAAAATAGCATTGATTGTTAAATCTTCAGACCACAATATTGCACTCACGCACCAGGAGGTACTGCCTTGTGAAAAACACAGCTTGAATTTCAAACACGAGAAGAAGCGCTCCAAATGCAAGATTTTGCTTAGACTGGAGTCAATCTCAAATGACACATTCAATTAACGAACAGCAATAAGCATCAAGCCAAAAAAAGGTATACGCACAtttgcacacgcacacgcacacatacattcacccacatatatatgtatatatataaacagcTGGCTTTTGTTATTTGACATGACTATCCATTACtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238899 lncRNA upstream 213975 20936806 ~ 20937292 (+) True G176507
TU238872 lncRNA upstream 533549 20616036 ~ 20617718 (+) False pappaa
TU238866 lncRNA upstream 648919 20500674 ~ 20502348 (+) True G176477
TU238868 lncRNA upstream 649443 20500466 ~ 20501824 (+) False G176477
TU238850 lncRNA upstream 651449 20497865 ~ 20499818 (+) False LOC120545557
TU238962 lncRNA downstream 242792 21397647 ~ 21399003 (+) True G176559
TU238978 lncRNA downstream 247059 21401914 ~ 21410459 (+) True G176565
TU239103 lncRNA downstream 500348 21655203 ~ 21655587 (+) True G176644
TU239168 lncRNA downstream 809241 21964096 ~ 21964825 (+) True G176696
TU239176 lncRNA downstream 816293 21971148 ~ 21971498 (+) True G176702
XM_039779630.1 mRNA upstream 449484 20696052 ~ 20701783 (+) True trim32
XM_039780440.1 mRNA upstream 530481 20515347 ~ 20620786 (+) True pappaa
XM_039780441.1 mRNA upstream 530481 20515347 ~ 20620786 (+) False pappaa
XM_039779999.1 mRNA upstream 653500 20458356 ~ 20497767 (+) False znf618
XM_039778767.1 mRNA downstream 306271 21461126 ~ 21472938 (+) True lhx3
XM_039778766.1 mRNA downstream 309494 21464349 ~ 21472938 (+) False lhx3
XM_039778765.1 mRNA downstream 309496 21464351 ~ 21472938 (+) False lhx3
XM_039778726.1 mRNA downstream 352625 21507480 ~ 21509631 (+) True LOC120544873
XM_039778727.1 mRNA downstream 352625 21507480 ~ 21509631 (+) False LOC120544873
TU238926 other upstream 204212 20946684 ~ 20947055 (+) True G176526
unassigned_transcript_963 other upstream 1633961 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 1763825 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 2427482 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 2464539 18676044 ~ 18686728 (+) False srsf9
TU239244 other downstream 1124025 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 1341558 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 1377053 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 1851412 23006267 ~ 23008812 (+) False klhl8
TU239701 other downstream 2027818 23182673 ~ 23184262 (+) True G177094

Expression Profile