RNA id: TU239244


Basic Information

Item Value
RNA id TU239244
length 3214
RNA type TUCP
GC content 0.46
exon number 2
gene id G176753
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 22278880 ~ 22282163 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGCGTGGCCAACAATGTAGTGACGTCAACCGACAGTCCTGATCATCTCTCTACAGCAACATGCTTCACCCTGCTGGAGGAAATGATAAACTAAATCTTTGAATTCATGCTCAAATATACAAGGCCGCAGCAACTGAGCACAAGTAacttacacataaacacataaaccATTCCCTGTCTACGGTGAAGCACATGGTGTTTAGCTGACGAGCAAGGCAGGCCGTTAACCCTCAAACCCTGGTGTCTGAATCGTTGACAAGCTAGGCCTCTCCAGTCTAAAGTTTCCCCTGAGCGTAAAAGAAGTGTAGCATTGGCCATGCTCCAGTTTCCaagccccctccctctcccgtCTCCCTTTAGTGTGCCTCCTGTGCCGTCCCTCTCCCCCTTCATATCTCTATTCCACAGAAATCTGGCTCCCAGCTACTCCCTGCTAGAAAAGTGGGAGCCAGTCAGGCGCAAGGGAAatagagggagacagagagagcgcaagaggaaagaaagagggggCGGGGTGGGGAAGAGAAGGAATGCTTTTCACATATTTTGACTGTTACTTTTGCAACTTTGCTTCCTCTCCTGGTTTTTTAAGCATCTCTTGTGCTTTTAGGGTCATCACCTAATTGCTGCAACTCCTATGAACTGCTCAACAATCTGTTATGCTTCCTCTCctctaaagacacacacacacacacacacacacacacaatcactagAATCCAGCCACGATGACAGACACATTCAAGGAAAGCCTGAAGAGGGGAAATATATGTGAGGGAAAAAATTAACACAACCCCTCTCAGAGCCATTTTAGTCGCCCCCGTCCTTCCcagactccccccccccctccctttctcgTTTCATCTGGCGGTGGCTGTGAATGTAACCGGTAATTTGGAAGGTCTCGTCTGAGACAAACTGCAGCGTTAATGCGGCAGAATCTCTGCCGGCCTGAGCAGACTCACCGCGGCCTGTCATTAGCCCTCATTAGACGCagacaaaaaaaagggaagaaaaagacaacactgggagaagagagagagaaacagagagaggggagggagggggaataAAAACTGAAACCATGCCTTCCATAAAACAAGAGGGGCTGTGTTCTTTGAAGTTAGTCGGAGCCGAGCCTCGGGTAGTTTATCGTAAATCCGTCCTCATGGGGTGCTGGGGGAAACTAAGTACCCAGCTATCTACCTTAGACTAAATAGAGGGGAAAAGCATTTATCTTTGAGATACAAGACAGAAAGTGTCTCTTGTGTCTGATGTATGACAGAGTCTCCGATCCTGGCCGAGCTCTGCTCTCTGGTCTGTTTTACATGTACGTACAGGAACAGCCGCGGTTGATGAGGAGAAGGATGCATTGGACTTTCTTAACAGCTGACAGAGGGCCTGCTGGTGGAGCTCACCTGTggggctctgtgtgtgtttgttattgcTAAGAGAGACAGGGCCTGGCGTCAGAGGTCATTAGAGCGGCTGCCTGTCTGAGCCTGTCATTGCAGCCTGAAAACACCCTGCTATTCAGGACTACACTAACTGCCCCGCTTCCCCTCCttcgtctcctctcctctcagaaACTCTGACTGGTAGCAaccacagaggagagaaaagcaAGGGAAAGATCAAATCAAAGGGttgaagagagacagaaaaaaacacagggaAACATGAAGGGCAACACAAAGGGTCAGCTAGTAAAGTGGTGTAAGAAGTATTCTTATGTGAAAGTTGCAATACTACAATGTAGAAATAATACATTACAAGTCCTGTAATGCCAGAGATAGATTAAAAAAGAATGGTTGACATCGATAATGCGTAGAGATATCCTGTCCCTAGTatgggtcaagctccaaaaaaCACTGGATCTTAAACATTTTTCAAACGCTAAGTCCAAACTGAGATAACCATGATGACcactatgacatcatcagggggttattttctcagacttctCCAAGAGCCACAGAGGGCATTATATGACTGTTTTCACCGACCAAGAGTAAAAAGCACAACAGTACTTTCCTTTGAAATGTagagtggagtagaagtataaaagGTAGCACAGCAACAGTTTGGATAGGAGCCCGACTGAAAGCTaaattgagagagagacaaatgATTCAAAAATATTGGTCACAGTATTTTGTCCAGCTCAAACTATACTTACAGGTAAACAAAACTATTTCTCTGTTCAATATATCAGCAGAGGAAAAGCCAGACTGGCAGACTCCTCCATCTGTGGGGTGCAGCCTTGTGAAGACTATGTTCACAGCTTGTCCTGACAGCAGATGAGCTTACACTTCATGTGTAATGctgctgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaagcaCCTGAAATAGTGTCAGACCGTAACATGAGGAGCGTGACCGGCAGGCACCttgcacgcaaacacacacaaacacagtatgTGTTAAAAATTTAAATTCAGTTAAATGAACCTTGCACATGGAACAAGGTGTGTCGATACAGGGCCACTcacattaatgtgtgtgtttatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatgtgtgtcagACGGTGTCGTCAGAGTGTCTGCACCGAGTTCGTCTGTCCTTGGAGCGCTGTGTTTCTGTCAGCTCCAGCCTCAGAACACTTACAGAGCTGTCTGTACATttgtctgcatgtctgtctgcTTTCTGGACGTCTGCCTATCGAAGCATTAGTCCGTCTATCTGTCTGCCGTCCCCACCTGCTCGTTTTCTCTGCAGCCCTTCAGCCTGTGTGTCTCAGGCTTCTCCTCTCTGGAGATAAGCGGGCTAGCTGGCAGCCTGAGGCCATCTGTCACCCCGGTCCTTTCTGCTCTGCTCCAGTCAGATGTCTGCTGCTAGTCTGTCCCAGTCTGGTTTTTCCCTTGGGGTCCACACATAAACCAAAtccaaaaaaaagattttcccTGCTGGTCCGCTATGACGCAAGAAGAGAGCTAAAAATGTTGATAGACCATTGCTGAAAGATACTGGAGCAGATTGGTTTGCATCATGCTACATGGATAATAAAATGATAACAGGCCTGGTTCAAATTTTTTGTGCATTGTAAGAAATTTCAACAAGCAGCTAGTGAGAGCTAATGTGGATGTTAGCCATTAGCAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239202 lncRNA upstream 220985 22057687 ~ 22057895 (+) True G176723
TU239178 lncRNA upstream 306437 21972109 ~ 21972443 (+) True G176704
TU239177 lncRNA upstream 306895 21971638 ~ 21971985 (+) True G176703
TU239176 lncRNA upstream 307382 21971148 ~ 21971498 (+) True G176702
TU239168 lncRNA upstream 314055 21964096 ~ 21964825 (+) True G176696
TU239296 lncRNA downstream 93505 22375668 ~ 22376537 (+) True G176797
TU239305 lncRNA downstream 108101 22390264 ~ 22390687 (+) True G176805
TU239310 lncRNA downstream 113938 22396101 ~ 22399573 (+) True G176808
TU239311 lncRNA downstream 117446 22399609 ~ 22400328 (+) True G176809
TU239312 lncRNA downstream 118407 22400570 ~ 22402064 (+) True G176810
XM_039779002.1 mRNA upstream 50996 22168378 ~ 22227884 (+) False ctif
XM_039778998.1 mRNA upstream 50996 22168379 ~ 22227884 (+) True ctif
XM_039779000.1 mRNA upstream 50996 22168379 ~ 22227884 (+) False ctif
XM_039779001.1 mRNA upstream 50996 22168380 ~ 22227884 (+) False ctif
XM_039778999.1 mRNA upstream 50996 22168380 ~ 22227884 (+) False ctif
XM_039779265.1 mRNA downstream 87004 22369167 ~ 22372791 (+) True rad1
XM_039779294.1 mRNA downstream 94950 22377113 ~ 22384622 (+) True dnajc21
XM_039779295.1 mRNA downstream 94950 22377113 ~ 22384622 (+) False dnajc21
XM_039779320.1 mRNA downstream 141419 22423582 ~ 22471548 (+) False nedd4l
XM_039779321.1 mRNA downstream 141419 22423582 ~ 22471548 (+) False nedd4l
TU238926 other upstream 1331825 20946684 ~ 20947055 (+) True G176526
unassigned_transcript_963 other upstream 2761574 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 2891438 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 3555095 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 3592152 18676044 ~ 18686728 (+) False srsf9
TU239368 other downstream 214250 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 249745 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 724104 23006267 ~ 23008812 (+) False klhl8
TU239701 other downstream 900510 23182673 ~ 23184262 (+) True G177094
XR_005636689.1 other downstream 1158827 23440990 ~ 23458605 (+) True hnrpkl

Expression Profile