RNA id: XM_039779438.1


Basic Information

Item Value
RNA id XM_039779438.1
length 971
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC120545252
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 22496413 ~ 22524405 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGGGACAGGTGAAGTTGTTTACTGTTTGATTACTGTCAAACAATCTGACGCGGTCACTATGATGCTACTGTAAAACTGAATGGACAATACTTAGGAAGAGAAAATACAAAGTAAAATGTGAAGCCAGTCATACTTTggcttcaaaacaaaacaacaatagTTTATATTTACATGAAACAACAGCCTGTTTTTTAGTGTTGCCTGTTAACGTTAGCCGTGTTGTTGTGAGACtagttagctagcagctagttctgtgagcaaaaaaacaaataacctTCTGAGCAACAAGTGGAACGATAAGGGCATTATATGACATGGATATGGACTGTATACTTCAAGGACTTGCTTCAACGACCGGTGTGGCCACTTTTTATTATTCTGGCTACAATACCGTGTGTGTTGTACTGCTCAGAGAGTCCTGCAGCTGTCGTTGGCAAAATGTATCCACGGGGTAACCACTGGGCAGTAGGTCATTTGATGGGAAAGAAGAGCATCGAGAGCCTACCTGAACTGCAGGAGACAAACCATGACAGTGACTACCTCACACCCTTAGAAACAGCTGGGGTCACAGAGCAACTGATGGAGGCACTGATGCAACAAAAGAACCAGGAACAGACGACGCCACAGACTGCAGACCGGCTGCTTCGGCTGCAGAGTGGCTGGAGAGAAGAGGACAGAGACAAATATCTCAGAGAGATGTCCAAGCTTCTTCTTCTGGCTTTGAAACTGCAAGACAATGAATCCACCTGAATACAAGACAGTCATCATTATCAACTAAACGTGCTGTAATCACATATTCAcactgtatatttttttctgctgtaaGAGTATGCTGGAAAGCAAATTGAAGATTATTTTATCAGTAATTTAATATTTCTAATATGCATCATGCAGCAGTTTGATTACAGACTGACAGGATAAGGTTATGTTGAATGCATTGAGATGCTGAATAAATTTAACATTGCGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239330 lncRNA upstream 18999 22474365 ~ 22477715 (+) True LOC120546009
XR_005636771.1 lncRNA upstream 20890 22474380 ~ 22475824 (+) False LOC120546009
TU239312 lncRNA upstream 94650 22400570 ~ 22402064 (+) True G176810
TU239311 lncRNA upstream 96386 22399609 ~ 22400328 (+) True G176809
TU239310 lncRNA upstream 97141 22396101 ~ 22399573 (+) True G176808
TU239381 lncRNA downstream 7503 22531908 ~ 22534295 (+) True G176870
XR_005636742.1 lncRNA downstream 13545 22537950 ~ 22540359 (+) True LOC120545780
TU239409 lncRNA downstream 34266 22558671 ~ 22560599 (+) True G176890
TU239419 lncRNA downstream 120631 22645036 ~ 22646108 (+) True G176898
TU239420 lncRNA downstream 121837 22646242 ~ 22648263 (+) True G176899
XM_039779320.1 mRNA upstream 25166 22423582 ~ 22471548 (+) False nedd4l
XM_039779321.1 mRNA upstream 25166 22423582 ~ 22471548 (+) False nedd4l
XM_039779322.1 mRNA upstream 25166 22423582 ~ 22471548 (+) False nedd4l
XM_039779323.1 mRNA upstream 25166 22423583 ~ 22471548 (+) False nedd4l
XM_039779319.1 mRNA upstream 25166 22439795 ~ 22471548 (+) True nedd4l
XM_039779284.1 mRNA downstream 287713 22812118 ~ 22814146 (+) True esm1
XM_039779009.1 mRNA downstream 299895 22824300 ~ 22892523 (+) True arhgap24
XM_039779010.1 mRNA downstream 343107 22867512 ~ 22892523 (+) False arhgap24
XM_039779011.1 mRNA downstream 354378 22878783 ~ 22892523 (+) False arhgap24
XM_039779012.1 mRNA downstream 359048 22883453 ~ 22892523 (+) False arhgap24
TU239244 other upstream 214551 22278880 ~ 22282163 (+) True G176753
TU238926 other upstream 1549659 20946684 ~ 20947055 (+) True G176526
unassigned_transcript_963 other upstream 2979408 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 3109272 19380277 ~ 19387442 (+) False LOC120545529
TU238154 other upstream 3809986 18676044 ~ 18686728 (+) False srsf9
TU239380 other downstream 7503 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 481862 23006267 ~ 23008812 (+) False klhl8
TU239701 other downstream 658268 23182673 ~ 23184262 (+) True G177094
XR_005636689.1 other downstream 916585 23440990 ~ 23458605 (+) True hnrpkl
TU239996 other downstream 1199095 23723500 ~ 23727242 (+) True rpl37

Expression Profile