RNA id: TU239693


Basic Information

Item Value
RNA id TU239693
length 1385
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G177089
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 23166559 ~ 23171678 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acaagaagttcctctactcaaaagaccaagattccttgcgaatagaacatgcgcagaacacaaatcaatgttccttttcatggggatatgccgatacgtgtttacatgaccaaaatttcgggttagaaaaggggtaacccaggtagcatattcgggtttttgccggtgtttaatgtccactgaaagCATTTTAGAAGCGGAGTGTCTGTTCTTTAGCAGCTGCATCTGTAGTTGAGAGTTGTTTTGctgatattttttgttttaccaacataaatacacatttgCAGTTCATTTAGATGTGGTAACAGATTCTTTATTATGGCTTTACTTTAACATGACAACCATTTATTGCCTCTGACTTTCTCGAATGTcactcattttaaatgaacatcGCACAGCTTTTTTCAGTTTATCTTTTGGTGATGTTGTGATTATAGAATAATTGGTTGGAAAAGGCTGCCTGGTCAGATTTCATACTCATAGATTTCATACTCATTCCATTGTCTGACAACAGAGACAGGAAATTATTTAAATGAGAATCACTAGATTGTGAATTTAGCTGCATTAAAACATGGTACAGGTGAACAGAGACAGCACAACACATTAGGTCCATCCTTTCTGCTCTCTCTTACTaatgacaaacacaaaaaaattgttttgctcTGTATGTCTCAAGAAAAATAGACCTGACTGCATAAAGCTGGCAGAGCAGAGAAAAGGTTACAAAGGTGGAGGACAAAATGGAAGACGAGTTTATTAAGGGGAATTTAAAACATGAATCACCACATTTACAGTATTACAGTTATATTTCCAAGAAAAACTAATATGTGATTGCATATACTGTGTATTTCTGCAGTATCCATGATAAACAGTCAGGGCCCAGGAGTGACGAAAGTCATTAAATAAGCAATAAATAATTGAAATACGAGATAAGTATGTTTTATTATTCAAAAGAAGAAACCTCCTCAGGTGACAAACTAGATTGTTGGGGATTTTTGCTTGGTGTCACATATGGAATAATCATTCCATCACTTCGCTGCAGCCCGGTGGTTCTGCTGAAGgttttaaatgattgattaaatgCTCAGACACTATGTGGAGAGATTCCTAATGATAATTAATGAACTCACTGCATTTGATTTACATAAATTATGtcgatatttttaaatatttttctgGTGTTTGCAACATGATCCAAAACACCTTTGCTGAGTTTGAGAGCTTATTGAAATACTAAATTAGCCATTGCTGTTGGAGGGACATTTAAAGTTAATCCTGGCTGtataaaatatttgtaaaataaataaaaatgaaaatgaaatggggCTAGACCGATTATaggctatgcactatagctttaatgtcccgcccacaacactatctga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239683 lncRNA upstream 24624 23141729 ~ 23141935 (+) True G177079
TU239635 lncRNA upstream 31672 23134649 ~ 23134887 (+) True G177043
TU239630 lncRNA upstream 49843 23104642 ~ 23116716 (+) True G177039
TU239631 lncRNA upstream 49843 23104642 ~ 23116716 (+) False G177039
TU239531 lncRNA upstream 232914 22893156 ~ 22933645 (+) True G176974
TU239698 lncRNA downstream 574 23172252 ~ 23177502 (+) True G177091
TU239700 lncRNA downstream 9022 23180700 ~ 23181267 (+) True G177093
TU239791 lncRNA downstream 158472 23330150 ~ 23331248 (+) True G177169
TU239793 lncRNA downstream 160220 23331898 ~ 23335577 (+) True G177170
XR_005636637.1 lncRNA downstream 164629 23336307 ~ 23347393 (+) False LOC120545237
XM_039779840.1 mRNA upstream 1358 23155838 ~ 23165201 (+) True amacr
XM_039779791.1 mRNA upstream 78149 23074570 ~ 23088410 (+) True LOC120545462
XM_039779792.1 mRNA upstream 78149 23074572 ~ 23088410 (+) False LOC120545462
XM_039778852.1 mRNA upstream 130463 23015127 ~ 23036096 (+) True LOC120544950
XM_039778850.1 mRNA upstream 157725 22998253 ~ 23008834 (+) True klhl8
XM_039779842.1 mRNA downstream 6386 23178064 ~ 23202930 (+) True slc45a2
XM_039780840.1 mRNA downstream 52009 23223687 ~ 23226613 (+) True nxnl2
XM_039780452.1 mRNA downstream 58159 23229837 ~ 23259542 (+) True csgalnact1a
XM_039780453.1 mRNA downstream 67232 23238910 ~ 23259542 (+) False csgalnact1a
XM_039780720.1 mRNA downstream 91794 23263472 ~ 23277088 (+) True plpp1a
TU239589 other upstream 157747 23006267 ~ 23008812 (+) False klhl8
TU239380 other upstream 629222 22531908 ~ 22537337 (+) False G176870
TU239368 other upstream 642191 22496413 ~ 22524368 (+) True LOC120545252
TU239244 other upstream 884396 22278880 ~ 22282163 (+) True G176753
TU238926 other upstream 2219504 20946684 ~ 20947055 (+) True G176526
TU239701 other downstream 10995 23182673 ~ 23184262 (+) True G177094
XR_005636689.1 other downstream 269312 23440990 ~ 23458605 (+) True hnrpkl
TU239996 other downstream 551822 23723500 ~ 23727242 (+) True rpl37
XR_005636817.1 other downstream 552488 23724166 ~ 23724245 (+) True LOC120546142
XR_005636816.1 other downstream 554296 23725974 ~ 23726052 (+) True LOC120546141

Expression Profile