RNA id: XM_039778726.1


Basic Information

Item Value
RNA id XM_039778726.1
length 1542
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC120544873
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 21507480 ~ 21509631 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGATGTACATGCACCGGCTCGCCGTCGCTGCCTCATCTCCGCTGGCATACAACAAATGCGTCGTGtagggggggaggagggaaaaagaaaacaaattccGTGTGTTTATGTTAATAGCTAACTGTTTATAATGTGATACAATGTTCCAGTCTTCTGAGACTCAAACACTAGCTGTTTTTGGTGAGGAGGAAGACGTCGTAGTGTTGCATGGACAACGTTGCTGACTGGAAtccacagcagacagacactaGCAGCAGCTACATCCCATTCCTGGGCTCCTGTAAGAGCCACTCTTTGCTCCACAACCCGATGAAGCTAACTTCCTCACCAGAAGCAACACTCACAGAGGACTCCACTTATAACTGGGACACTTGTGCAGGGCTCCAGTAGCCCACCCATGCCTGTGATCCCCATCCCACGGCGGGTGCGCAGCTTCCATGGCCCCCACACCACCTGCATGCACTCGGCCTGTGGGTCGACGCACGCTTCCAAGCTGGTGCGCACCAAGTACAATAACTTTGACCTCTACCTCCGCTCGCGCTGCATGTACAGCTTCCTCCGTTTCCTCCTCTACTTTGGATGCAGTCTGCTGACCTCTCTGCTCTGGGTGGcgctctctgctctcttcttCCTGCAGTACGTCAGCGTGCGCGTCCTCCTGCGGCTGCAGTACAAGCTGTCTGTCATTCTGCTTTTGTTAGGACACCGGCGCCTTGACTTTGGGGTGCTTAATGACCTGATCATCTACAGCATGCAGATCACCATGTTTCTGGTAGGGGGGCTTGGCTGGTGCTTCATGGTGTTCGTGGACATGTAGCTGCAATGTGAGCAACATGGGAAATGTAGTGTGCGATGTGGATTAAACACTAACTTCAGAATTGTGTGATGCTACTGGACAACATAAGCCTTTAGCATGTTCTGTAGGACTGCTCCATATCTCCGCTCTAGTCAAAAAGACCCATTTGACGTCAACTCAAAGTTCTATATGGTTTAGTTTCAGATATGATAGAATCCAATAAGAGTCTGTGTACCAACTAACTGTGTCCATAAAAAATGATGCATGAGTCTGACTCGAGTCATCATGCAGGACTCTCAAGAGACCAATAGGGTCCATATCGCTTCAATttcaattgtattttaatgccaTTTGCAAACCATTTCACACATTTTGAAAGGCATCTTGACTAAAAACTCATTTGTTTATAATAATGGAAAATGTGAATGTCAAAATCAGTGTTGCATGGAAAAGTGACTGATGTGCATCATGGCTGTGTGATGCAAGACAGTTGTTTGTGCTAAAATGCAATCCAAACGCAAGTCTACTCTGATTCCTAGATTGTGATAATGACAGTTATGTATATATGCAAATACTGTATACATGTACCACAGAGACGCAGTCACTTATGGTGGataaagtgaccaaaaacaagttgttgacagtgtgtgtaatgtgattTTTGTGGAAGGGGATGGGGTAGAATAGGAGAATAAGTGACAAACGTCAACTCTTTTTGTAAagtgaataaatacattttctgttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238978 lncRNA upstream 97021 21401914 ~ 21410459 (+) True G176565
TU238962 lncRNA upstream 108477 21397647 ~ 21399003 (+) True G176559
TU238944 lncRNA upstream 352625 21151267 ~ 21154855 (+) True G176542
TU238899 lncRNA upstream 570188 20936806 ~ 20937292 (+) True G176507
TU238872 lncRNA upstream 889762 20616036 ~ 20617718 (+) False pappaa
TU239103 lncRNA downstream 145572 21655203 ~ 21655587 (+) True G176644
TU239168 lncRNA downstream 454465 21964096 ~ 21964825 (+) True G176696
TU239176 lncRNA downstream 461517 21971148 ~ 21971498 (+) True G176702
TU239177 lncRNA downstream 462007 21971638 ~ 21971985 (+) True G176703
TU239178 lncRNA downstream 462478 21972109 ~ 21972443 (+) True G176704
XM_039778767.1 mRNA upstream 34542 21461126 ~ 21472938 (+) True lhx3
XM_039778766.1 mRNA upstream 34542 21464349 ~ 21472938 (+) False lhx3
XM_039778765.1 mRNA upstream 34542 21464351 ~ 21472938 (+) False lhx3
XM_039779630.1 mRNA upstream 805697 20696052 ~ 20701783 (+) True trim32
XM_039780440.1 mRNA upstream 886694 20515347 ~ 20620786 (+) True pappaa
XM_039779848.1 mRNA downstream 3542 21513173 ~ 21543255 (+) False LOC120545487
XM_039779846.1 mRNA downstream 3542 21513173 ~ 21543255 (+) False LOC120545487
XM_039779849.1 mRNA downstream 23002 21532633 ~ 21543255 (+) True LOC120545487
XM_039779847.1 mRNA downstream 23876 21533507 ~ 21543255 (+) False LOC120545487
XM_039780597.1 mRNA downstream 37203 21546834 ~ 21584572 (+) False nup214
TU238926 other upstream 560425 20946684 ~ 20947055 (+) True G176526
unassigned_transcript_963 other upstream 1990174 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 2120038 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 2783695 18676044 ~ 18723785 (+) True srsf9
TU239244 other downstream 769249 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 986782 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 1022277 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 1496636 23006267 ~ 23008812 (+) False klhl8
TU239701 other downstream 1673042 23182673 ~ 23184262 (+) True G177094

Expression Profile