RNA id: XM_039778737.1


Basic Information

Item Value
RNA id XM_039778737.1
length 3165
RNA type mRNA
GC content 0.45
exon number 18
gene id LOC120544885
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 3483725 ~ 3505303 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATTTCCAAGGCATTGTATCATTGGCTACTTTTAAAGGGAGTGTTTACTGCAGGGCGTAACTTGACACTGTAACTCTTTCAGTTTTATTCTTACCCCTTATTTCCTTCACATTAAATTCATTCCGTGTGCAAGATCCTTGACAACCAGTCAGACATCCTCATgtaTCAAGTGTAATAAGTGGACGTTTCTGATGTCTTGTCTATGATGACAGCACTAAATCAATGAGGGCTTGCTGACAAGTTTACATTAAAGGAATAACAGCTGATCCCAAATGGTCCTTGTAAAGGGGATTATGATGATCCCATGGTTATTACTGGTCTCACTGTTCTGCAAGAGCACACAGGATGGAAATGGCCAAGAAAGTGGTGTCCTGCATTGTGGAGCTCAGAATCTGAAACTAACCAACTCCAGTCAGATGATCCTGTTAACATGGGAAGACACGCCTTCATGCTCTACAGTACAGGATGTGCTGATCTATGAGCTGGAGGTTCTCATAGCGGACAAGAAAGAACATTATGATGAAGTTGCTGTGACACCTGACCAGATAGGATCTACTCACTCCTGGAACTGGAAGTCATATTTGGCATTGGAGTGTGCTTCCCATTCAGTGAGGCTCAGGTCCCGATACAAAAACCACACAAGCCAATGGAATCAAGAGACTCTTCCTGGGCTTGAAACATCAAAAGCTGAGGTTTATCCAAAGGGCAAACACTTCCAGGTTGGCAGTACAGCCACCTTCTGCTGCGTTCTGCCTGCGGGGGACGTTTTTGACAAAATGTCTCTGCCTGAGTATAGTAGTGCTGATATGAACACTACCAGGATCAGCAATCAGACCTATGCCTTGACCGTCCACCTGAACCAGGCATCAAAATACAGTTGCACTGATGTAAAATGTGAACTGAATCCTGATGTTGTATATGGGGCTTGTGCTTATATTGGCTACCCACCTAATGTCACGGACCTTCAATGTGAAACCCGAGATCTGCAATCAGTCGATTGCCACTGGACGGATAAAGACTCAAGCCTACCCTTTAAGAGTGTAACAGAGTATCATCTACTTGAAAGTCCGACAATCTGTGCAAAGTGGCCTGAGACGACATGCTCTCAAGAAGTGCGAGTCGACGCTCGCGAGAGAAACTGGACATTAACAGCAAGTAATCCTTTGGGCGAGGTGAAGCTTTCCGACACTGCAGACCTGACTAAAAGAGTGCACATGTTCCCTCCTGAGGGAGTGACAGCTTTGAGTGTGAATGCCAGAAATGTCAGCCTGGAGTGGAAGTGGACGGTGCAACAGTACTATAATCTCAGTTTAATATGCCAAGTGAACATTAATAACCACGGTGAAAACACCATAAGTGAATACTTTGGAGTTGGTCTTAAGTTTGCAGTTTTGAATGATCTGATACCAAATTGGACATATAATGTGGCAATACGATGCAGAACAGCACAACATTTCTGGAAATGGAGCAGCTGGAGCACAAATGTCAACTTCCATACAAAGGGTGATGTTCCAGATGCTCTTGATGTGTGGATGCAGGTGATGGACAACCAAATTATAACCATCTGGAAGATGCCACTGGCCAACCAGAGTCATGGACACATCGAAGACTATGAAGTGACCTGGACCAAGACCACGGAGAGAGAGCGACAAAATAGGACCAAAGTGGCTCCCAACAATTTCAGTCTTGCCCTCAGTCTGGACACCACTGTCGGGCATATCGTCACAGTTACAGCTAGGAATATAAACGGCAGTTCAGCCCCATCAACCATCACCATCCCCAGCTCCAATCCAGACGGAACCAGAGTGAACACTTCTTTGATCATTGGCAGCAGCGGTAGCTTCAACCTGTCCTGGTCTGCCAGTCCAACAGCCAGCTGTGGCTACATAGTGGACTGGTGTTCTACCTTAGGAAATTGCACTGTGGAGTGGCTGAAAGTGTCTCCCAATCAGACTAATGCCAGTATATTTTCAAAAAACTTCAAAGATGGACTGAGATACACTTTGTCAGTATATGCCTGCACCCAGGGAGCTCCTGTGCTACTACAAAGAAGAGAGGGCTATGTTGGAGAGAAAAAAATACAAGACGGCCTGTTTAAATCAGTCAAGGGGCAACAGCAGGATTGGGATTACGAGGTATCCTGGGAGCCTATATCTCGAAGAGAGCAGACTGCTTTTATCCAAGGCTATGTCCTGTATTGTttggacaacaacaacaacaaagtcaTCAACTTCAGCACAGACAATCCTGAAGCCAATAGCCTGACAGCAAGAAACCTTAAAAATGGTTCCTACATATTCACAGTAAAGGCACGGACAGCAGTTGGAGAATGTGGCGCTACATCCATCACTGCCACCTTGAATTTACTgaCTGATAACTTGATAGGGACAGTCTTCATTTCCCTGGctgctgtttttggtctccttTCCCTCATCACTATTGTTTGCTACAGACACTGGACATGTATCAAAGATACGGTCTATCCTCCTATCCCAAAGCCAGTGTTGACATCAACGgGTGAACATGGATGTCGTAATTTTCAGGTGGATCAGTGTCACTATAGTGAAGCCGATATCATGGATGTTCCGGAACTGTATTGTAGAGCAGGAACACCAATAAATGGTTTTGTCAGCCAGGAGAACATGCCATTTGTTTTTTCACAAACTCCAAAGGGTTACTACAACCAGCCCCTGAAAAAGTTCACCCCACCACCCCTCACTTTACCATCTACAGCCATCCCATCTCAGCCAGGGTTACCATCTTCTCCATTTAGAAGGGAATTTCCTAATGCGTCATACAACCTGATAATGCAGCCTGGGAATCAGCAGTCCAACTTCTGTCCTGAGCTTCAGGAGGGAATGTCTTTAGAGAGAAGCTCCGATGGATACCAGCCTCATGGTCACCCGGAAACCTTCACTACAAACCAGACAGAAGAAGATCCAGACACTCCTATGTCCTGTGTCTCCACTTACATATTGTTACCACAGTCATCTTCCAGATAGCTTCTGCATGCAATGCCGGTATGGTATGTTATAGGTAGGGTAGCCAGAAAACTGAAATTTAACATGGATTTAGTGAAACACTtatgccttaacgaccgttatctaccggaccaaatagcaacgcggatttcggtgccttatttaggtgccacttagatGCCTG

Function

GO: NA

KEGG:

id description
K05057 OSMR; oncostatin M receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233656 lncRNA downstream 20625 3460345 ~ 3463100 (-) True G172468
TU233629 lncRNA downstream 112927 3363517 ~ 3370798 (-) True G172444
TU233628 lncRNA downstream 120506 3362747 ~ 3363219 (-) True G172443
TU233624 lncRNA downstream 125205 3358125 ~ 3358520 (-) True G172439
TU233616 lncRNA downstream 156491 3325766 ~ 3327234 (-) True G172432
TU233694 lncRNA upstream 12706 3518009 ~ 3518953 (-) True G172504
TU233697 lncRNA upstream 34972 3540275 ~ 3547689 (-) True G172507
TU233740 lncRNA upstream 162625 3667928 ~ 3668180 (-) True G172549
TU233744 lncRNA upstream 177048 3682351 ~ 3683384 (-) True G172553
TU233747 lncRNA upstream 202281 3707584 ~ 3707824 (-) True G172556
XM_039780844.1 mRNA downstream 8483 3463902 ~ 3475242 (-) False june
XM_039780847.1 mRNA downstream 8559 3463902 ~ 3475166 (-) True june
XM_039780845.1 mRNA downstream 8816 3463902 ~ 3474909 (-) False june
XM_039780846.1 mRNA downstream 16962 3463902 ~ 3466763 (-) False june
XM_039780653.1 mRNA downstream 201773 3277549 ~ 3281952 (-) True LOC120545955
XM_039780821.1 mRNA upstream 47135 3552438 ~ 3582804 (-) True LOC120546063
XM_039779252.1 mRNA upstream 95235 3600538 ~ 3630312 (-) True crata
XM_039780782.1 mRNA upstream 178240 3683543 ~ 3685682 (-) True ier5l
XM_039780665.1 mRNA upstream 314806 3820109 ~ 3838641 (-) False ndor1
XM_039780664.1 mRNA upstream 315121 3820424 ~ 3839820 (-) False ndor1
TU233470 other downstream 498465 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 1881569 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 2312936 1170203 ~ 1170789 (-) True G171868
TU233826 other upstream 381285 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 636550 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 1265514 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 1344645 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 1344645 4849948 ~ 4897357 (-) False odf2a

Expression Profile