RNA id: XM_039778765.1


Basic Information

Item Value
RNA id XM_039778765.1
length 2191
RNA type mRNA
GC content 0.48
exon number 6
gene id lhx3
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 21461126 ~ 21472938 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGCTCCTGATACACAAATTTGACAACACTTGCCTGGTCTGTGAGTGTGAATAGATCACAAATAAGACAGATTTGCATTCATGTGAGCGTAAATCATGAGCAATGGATGGACATGGTGAGCGCAAGTCTTTAAAAGAGGGACCCAATAACACGGAGATGCTCCTTGCTTTGCTCTCGCACAGTGAGGAGCTACGGAAAGAAATCCCAGTATGTGCAGGCTGCAGTCAACACATCGTGGACCGCTTTATCCTCAAAGTGCTGGATCGCCACTGGCACAGCAAGTGCCTGAAATGCAGCGACTGCCAGGCGCAACTGTCGGAGAAGTGCTTCAGCAGGGGCGACAGCGTGTACTGCAAAGAGGATTTCTTCAAGAGATTCGGGACCAAATGCGCAGCCTGTCAGCAGGGGATACCGCCCACACAGGTGGTGAGGAGAGCGCAGGACTTTGTTTACCACCTGCACTGTTTTGCCTGCATCGTGTGCAAGAGGCAACTGGCCACAGGTGACGAGTACTATCTGATGGAGGACAGCAGGCTGGTGTGTAAGGCCGACTACGAGACCGCCAAACAGAGAGAAGCAGACTCGACTGCAAAAAGGCCACGAACAACCATCACTGCTAAACAGCTGGAAACGCTGAAGAACGCTTACAATAATTCTCCCAAACCTGCCCGACATGTCCGGGAGCAGCTATCATCAGAGACGGGCCTGGATATGCGGGTTGTGCAGGTTTGGTTTCAGAACAGGCGAGCTAAAGAGAAAAGGCTGAAGAAAGACGCCGGTCGGCAGAGGTGGGGGCAGTATTTCCGCAACATGAAGAGGTCACGAGGAAGCTCCAAATCGGACAAGGACAGCATCCAGGAGGAGGGCTTGGACAGTGACGCCGAGGTGTCCTTTACAGATGAACCACCAATGTCAGAGCTTGGCCTCACTAACGGCATCTACAGCAGCCTGAGTGAGTCCTCCCCAGGCATTGGGGGCCGCCAGGGGGGCAATAATCATAGCTCCTTCCCCCTAGAGCATGGCGTCCTCCCCTCTCAAGACCAGTTCCACGACATCCGCTCCAACAGCCCCTATGGCCTTCCTCAGTCGCCGGGGTCGCTTCAGGCGCTACCCAGACACCAGCCTCTCATCTCTAGCTTGGTCTACCCTGACTCCGGCCTTTCTATCATGACCCAGGGCAGCGGGCCTGGGATCAACCCTGCCGTGAGGGTCTCCATGGGGGCCGCCAACGGCCCCAGCTCGGACCTATCGACTGGCAGCAGCGGAGGATACCCTGACTTTCCTGCCAGTCCTGCCTCCTGGTTAGATGAAGTGGACCACGGGCAGTTTTGATTGGTCAACAACTagaaatttgactttttttttctttgggttTCTGTGTCTTCTTTTGGATTTTAGGAATTGGAAAATAGTCACACAGGACAGTGATTGTGCAAAGGACTAGACTGACCTTGGATCTCGCAAACATCTGATTAACAGGTCCATTCAATATCTGGGATcaggatggaaggaaggaaggagaaaaaATGTCCTTCATTTACAGCACTTGGCCTAACAACTGCCCCTCAGTAGTTAAACCGTATTTAAAGCAAGACATCTGTCAAAATATTCAGTTTTCAGATACCACTATAAGCTTTCTCAAAACAATGAGACTCACTCGATTATTCAGATTTGCACCAACTTGCCCTCTTTATTCTCATCTCGTTGTTTTCTACACTGTGTTCATGTGCAGAATTCAGCACAACGTTCAGAGTCTTTAAATGTCTGGTTGTTGCCAAAtgtcgatatatatatatatatatatatatatatactgtatatatataatggttATCATTGTGGAGACTTTATTTTTATACAAACCCCTTCCTGGACACGAAAAGGAACCCAGATATGAGGACTTTGTACATTCTTAAACAGGGATATAGGCAAAATGTAGATGTTGTCTTAAATGGTACCTAGGGGTCCAATTACTtctatgcatttgtgtgttctCAGATGTATCTTGTTCGATTTGTTCTACCGAAAACAACCCCAAGGAAGAACTTGCTGTAGCACTCGGGGTTTGatgtatatgtttgtttatgtggaAAATGTTTTATGTCTTATTTATTCCCTCTGGTAATGATGACAATGATGATGATTCCTGATTAAATGACAGGACTTTAATAAATTTGTCACCTAAATCAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238978 lncRNA upstream 53892 21401914 ~ 21410459 (+) True G176565
TU238962 lncRNA upstream 65348 21397647 ~ 21399003 (+) True G176559
TU238944 lncRNA upstream 309496 21151267 ~ 21154855 (+) True G176542
TU238899 lncRNA upstream 527059 20936806 ~ 20937292 (+) True G176507
TU238872 lncRNA upstream 846633 20616036 ~ 20617718 (+) False pappaa
TU239103 lncRNA downstream 182265 21655203 ~ 21655587 (+) True G176644
TU239168 lncRNA downstream 491158 21964096 ~ 21964825 (+) True G176696
TU239176 lncRNA downstream 498210 21971148 ~ 21971498 (+) True G176702
TU239177 lncRNA downstream 498700 21971638 ~ 21971985 (+) True G176703
TU239178 lncRNA downstream 499171 21972109 ~ 21972443 (+) True G176704
XM_039779630.1 mRNA upstream 762568 20696052 ~ 20701783 (+) True trim32
XM_039780440.1 mRNA upstream 843565 20515347 ~ 20620786 (+) True pappaa
XM_039780441.1 mRNA upstream 843565 20515347 ~ 20620786 (+) False pappaa
XM_039779999.1 mRNA upstream 966584 20458356 ~ 20497767 (+) False znf618
XM_039778726.1 mRNA downstream 34542 21507480 ~ 21509631 (+) True LOC120544873
XM_039778727.1 mRNA downstream 34542 21507480 ~ 21509631 (+) False LOC120544873
XM_039779848.1 mRNA downstream 40235 21513173 ~ 21543255 (+) False LOC120545487
XM_039779846.1 mRNA downstream 40235 21513173 ~ 21543255 (+) False LOC120545487
XM_039779849.1 mRNA downstream 59695 21532633 ~ 21543255 (+) True LOC120545487
TU238926 other upstream 517296 20946684 ~ 20947055 (+) True G176526
unassigned_transcript_963 other upstream 1947045 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 2076909 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 2740566 18676044 ~ 18723785 (+) True srsf9
TU239244 other downstream 805942 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 1023475 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 1058970 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 1533329 23006267 ~ 23008812 (+) False klhl8
TU239701 other downstream 1709735 23182673 ~ 23184262 (+) True G177094

Expression Profile