RNA id: XM_039778794.1


Basic Information

Item Value
RNA id XM_039778794.1
length 2416
RNA type mRNA
GC content 0.50
exon number 11
gene id pax8
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19929571 ~ 19943843 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acaacacaacagcagcccTGCCTCCTCCAACACAGCCCGGACACGCACCGTATATCACACCGCCAGAGTCCTCATCATTTTGGATAATATAATATCTGCTGGGGGACGTTTGTATTTTGAGCTGCGTCGTTAAAAAGGTGGAATGTTTGTTAATGGACGTCCACTACCGGAGGTAATCCGGCAACGCATCGTGGACATGGCCCACCAGGGGGTTCGGCCCTGTGACATCTCCCGGCAGCTCCGAGTCAGCCACGGCTGCGTCAGCAAGATCCTGGGACGTTACTACGAGACAGGCAGCATCAAGCCTGGCGTGATCGGGGGCTCCAAGCCCAAGGTGGCCACCCCGAAGGTTGTGGATAAAATCGCAGACTACAAGAGGCAGAATCCCACCATGTTCGCCTGGGAAATCAGGGACAGACTGCTGGCGGAGGGAGTGTGTGACAGCGACACGGTGCCCAGCGTGAGCTCCATTAACAGAATAATTCGAACAAAGGTCCAGCAGCCATTCAATCTGCCTCTGGATGGAAAAGGCCTGAGTCCAGGGCAAACCTTAAtcCCGAGTTCAGCAGTCACCCCTCCCGAGTCTCCACATTCAGACTCTTTGGGCTCCACCTACTCCATCAGTGGCTTGTTGGGTATCCCCCAACCCAGCGCCGAGGGCAAGAGGAGCCATGATGACAgtGATCAGGAGAGTTGTCGGCACAGCGTGGACTCTCAGGGCAGTGCCGGCGTCCCGAGGAAACAGATGAGAGTGGATCACTTCTCAACCACGCAACATCTGGACTGTGGGTTTGATCGTCACCACTATCCCCCGGACTCATTCGGCTCTGCCTCCAGCAGTAAGacagagcagACTTTGTACCCGCTGTCCCTCATTAATGGCAGCCTAGACGAAGCCAAGACCAGCCTCTCAACATCCAGCTCCGCCATTGGACGGAATCTGACGGCGCACCAGAGCTACGCCATGGTGACCGAGCCCCTACAGTCCCTGCCGCTCTGTCTAAAACAGGAAATGTCCCCAGAAGTGACCAGCACGAGCCCCTCCCCAAATATGGCAGCGTCCAACCTGGCATTCGTGGAGCTGCAGTCGCTGCAGAAGCCCGTTTCtgtcagcagcagctgcagcaactccaacCATTTCCCCAACGCCTTCAACTCATTCTCCCATCATGCACCGGTGTATGGGCAGTTCAGCAGTCAGTCTATCATCTCAGggCGTGACATGGTGAGCTCCACCCTGCCGGGCTACCCACCTCACATCCCCTCCCCTGCCCAGTCAGGATACTCCACCTCTGCCATCACGGGCATGGTAGCAGCAGGCACAGATTACTCGGGTCAGACCTACAGCCATTCGCCCTACACCTCCTACAGTGAAGCCTGGAGGTTCACCAACTCCAGCATACTGGGTTCACCCTATTACTACAGCACGGCCTCCCGCACCGCCCCACCATCTGCCGCCTACGACCACCTTTAGtaccccccccttcccccccaacCTCCCCGCCGCTGCGTGGGTCCTGACTCCACCCGGACCAAGACTGGAGAACTCAACATCAGCTGACACATCTGATTACGGACCAAGGCATGAAAGTCAAAACTGGATGTGAACTTGAGACTCTGCTGATGAACcagcaacacatttttttttttttttttactacaccTACTCAtatgttatttatttgtcattattgATACCGTTGCCCGGGGTAACTTTGACTCATGCACGTTTACACATTGCTAAATCTCCTCCCATGCAGGGCCTGTTTCCAGAGACTCAGCCTGACGTCTCATATCGAGGTGCATATTTTCAGTATAGAATGCTGTTTTGGCCAAAGACTATCTTTCATCGCACATCTGCAACTTGACACTGATCCAGTGAATACGGATATGCAACTTCTTTATACTGAACTATGCCTGCTTTTGTTTACAATGCTTTCTGTCCTGTCATCACACATTGATTCCTTTTTCTTGATCTGTGTCTGCTTGCAAATTCATTTGTATGACttgttttcactgtaaatgcagaTCTTTTCCTGTAGTGAACATAGACTAAAGGGTGACACATTAAATCACAATTACAACAAAATGCCCACATATGCCCCTCAGAGACAATTAATGTATTTGTCTAGCAATATGTATATGTTGTAAATGATGAATTACTTATGGGGAAGTGATGCAATTTTACTCAGAGAATGATTGATGACGGAGGGGGATGATGGTGATTCGGCTACAAAAACCAACAAGGCttgaaatacttttgttttgctTCAAATAAATTTAGTTTGTTGTCATGCTGATGTTCTGATGTTTGGTAAGAACTGTGACTATTTTTTCTTATActgttattaatattattgcAGATGTAAATAATGAATTTCTAaagaattattttaattaaagcaTGACAAATTTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043049 otic placode formation biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238611 lncRNA upstream 14909 19911836 ~ 19914662 (+) True LOC120545241
TU238598 lncRNA upstream 23448 19883987 ~ 19906123 (+) True G176289
TU238605 lncRNA upstream 36792 19888869 ~ 19892779 (+) True G176292
TU238595 lncRNA upstream 60024 19867818 ~ 19869547 (+) True G176287
TU238594 lncRNA upstream 79666 19849690 ~ 19849905 (+) True G176286
TU238670 lncRNA downstream 111446 20055289 ~ 20061984 (+) True G176346
XR_005636606.1 lncRNA downstream 124917 20068760 ~ 20069830 (+) True LOC120544937
TU238655 lncRNA downstream 136008 20079851 ~ 20087641 (+) True G176335
TU238681 lncRNA downstream 145263 20089106 ~ 20090858 (+) True G176357
TU238769 lncRNA downstream 293684 20237527 ~ 20241216 (+) True G176410
XM_039779421.1 mRNA upstream 14891 19911870 ~ 19914680 (+) False LOC120545241
XM_039779422.1 mRNA upstream 14891 19911870 ~ 19914680 (+) False LOC120545241
XM_039779419.1 mRNA upstream 29311 19894116 ~ 19900260 (+) True lman2la
XM_039780631.1 mRNA upstream 404247 19516810 ~ 19525324 (+) True ddx54
XM_039778899.1 mRNA upstream 443465 19467053 ~ 19486106 (+) False abl1
XM_039779960.1 mRNA downstream 19928 19963771 ~ 19970112 (+) True LOC120545547
XM_039779961.1 mRNA downstream 19929 19963772 ~ 19970112 (+) False LOC120545547
XM_039779962.1 mRNA downstream 20457 19964300 ~ 19970112 (+) False LOC120545547
XM_039778837.1 mRNA downstream 77114 20020957 ~ 20028430 (+) True bspry
XM_039779815.1 mRNA downstream 94021 20037864 ~ 20048228 (+) False traf2b
unassigned_transcript_963 other upstream 412265 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 542129 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 1205786 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 1242843 18676044 ~ 18686728 (+) False srsf9
TU238926 other downstream 1002841 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 2335037 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 2552570 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 2588065 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 3062424 23006267 ~ 23008812 (+) False klhl8

Expression Profile