RNA id: XM_039778834.1


Basic Information

Item Value
RNA id XM_039778834.1
length 3788
RNA type mRNA
GC content 0.43
exon number 12
gene id LOC120544936
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 1174528 ~ 1183903 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgttaaagagTAGTCGTttagactagaaaagcgctatataaaaatagtCCATTTAACTGTATTTCAGTGTTGTCATACAATGCTATATTTCTGCCATCCAAGGAAAAAGCCAAGGGGGAAGCAGACTCTGCTACAGGCAGTACTTTCAGGTCCGATGAGTGGAAAGAAATGCTGAAGGAAGTCCACTgctaaaaagaagcagaacTGGAGAGACACAGAATCGTGCTTCAGCTACAGAGAGTGAGATGCAGGAAACTGCAGGACATTCTGCAGACCTCAGAAGATATTCCAGATGCAAGTGGACATCCTTCCACCTCCATATCATGGTGCATGTGCCAATCTGCAGGCCAAGATGAGTGGCGGAAAGCGAGGTCTCATCATCTGAGCTGCTTGCTGTCCTGCAACGTGGTTCCAGAAAAGAACTGCAGCCACTGCACATCTCCTGCCATCATTCGATGCAGAGACTGCATGCCAGAGGAGTGGCTGTGTACGGAGTgtgacacacacatccacaaaaaacacacactccatAACAGGGAGTCCTGCATTGGGGGAATTTACAAGCCCATAGAGCCAACAGTGTGCTGCGTAAAGCAAGATGGCGGATATACACTGGTCAATCAAGTATGTCTTTTGCCTACAGTGAGGACTGTCCAGTTGTGCACGTGTGATCCTGCAACCATAACAGAATCGGCTGGTAGAGCAATAATTATGGTTTGCATAAATGgtCGGTATGATTTGCACTTGCCAAACTTGTCTTGCAAATTATGTCTGGCACAGTGGACACCTGACATGAGCGACCTCATACGCAGTGGGTACTGGCCAGCATCTGTGAATGCTGACACATTGTTTTCAGTGGATGTCTTTACTTCATTTGAAGAGTTGAAAACTGTGGCTCCCAGTTTTTCGCGTCAGGTTTTTTTGGAGAAGAGGACCTGTCAATTTGGAAGGACTGCCGGCAGAGGAATCTGTGGAGCCAGTCGGTGGTCTGCTGCATGTGAGACAGCCAGAAGAGCTAGTAAACTGGATGAAGAGGGCATTGAGGTGGTTGTTTGCCGACACAGAGTGCTATTGAAGGCCCTCAACATGTATAGGGGGGAAATATTTGCTTATCCGCTGTTCCTGCAAAAGGAGCTTCAGACAGCCACAAATGGACAGTTCTTTTGCACGGATATTGCTTGCAAGTATTGGCCCTACCTTGAAAAGTTGTCGGTCTCCATGTCAGAGCTCAGACCTTTACTACAGATGAGGCCATTCCTTTCTGTCATGCATGCCAAGGCCCATTCAACAAAGAGTAAGATAATCTGGAGTGGCAAAAATCAAGAGGGTGCTGGTACAACTGCAGGGGAGGAGGTCGAAATGGTAAACAGCTACCTCTGTCGTTGTGCCCTCACAACCAAGTACATGACAAAATCTGCCAGGAATGACATGTTAACAGTCCATGCTATTGGATGGAACCGACGGAAGCAGGATGGCCTTCATCTTGCATTATCCAGCAGATACGTCAAGacTTGTGAAAAGGCGGAGGCTGAGTCTCAGAGACTGGAAGATTTGAGCAGTCAACTTGGTTGCCCTGAGAACATGGTGCATCAGTGGGTTCATGATGTCAGAGAATGGGCTTCTGATGattCTGCAGGTACCAGATGTGATGACCAACAACCTCTTCAGGAATCAATTGAAGAAATGTTTCTTGCAGTTCATCACAGAAAAGCCAGCCTTTATAATCAGACTGGCCTCGTGCCGTCATTCAGTTGCTTCTCTCAGTCCGCGCCAGACTAGCTGAGAGGAGACAAATCCACCGTTCTGCCTTCATTAAAAGAGAAACCAGCAGCTGGTCGTGGTCCGGGTCCTTTCTTCACTCATTCAGTACAGCATAGAACACAACGCAGAACAACGCAGGTTAATGGACGTGCATCCAGCCTGATTTAAAACTGTTAAAGACGATGCACGCCCGTTACATTTACATGTCAAAAGTGCGGCTTCAAGAGGAAAAGATCATTTTGATGAGGGAGATGAGACAGCACTGCACCTACCTCAGCAAGCTGGCCTGGAGTCTCCGCAAAATGATGTCAGAAATGTCTTCTGGCCAGAACAGTGGCAGTTAAGTGAAGAGGGGCATCGTGGGCTGCTGTGTCTTCATCAGAAAAGGCTTGCTGATGTGGAGGAGAAGTTCCAAGTCGTTAGCTCAAGGTACAGCCAGGCTTTAGGACTGAATGCTGCTTCTCTGCTTGAGGATGGACCCGAGGACATACCGGAGGACGACAAAGAACATGTATATGAGAGTTCAGATGAGAGTGATTTTGAGGCAGTGTAAACCAGAGTTTTTCGAAACACTAGCTTTATAGATGGAAAGGTATTGCATCGGATTTATGTATGTCAAGCGCGATATAATTTTCCCTGCAAGAGCATGTATGccctccagctctctcagagcAGACACTTCCTCACACGTGGTGGCTGCTCTGTGCGAGTGCTGTTTAGTTTCGTACACGAAGATGCCATTATGTAACtcttcctattttttttttgtgtcacgCTCCCAGCTGCCTGCACGACTCTCGGTTGTAGAATTGTTATACAAAGACTAAAATCTGTGCGCAAGATATAATATAATTTGCTTGTGAGCATGTTTTATCGTGCTCGCGACATATGACATAAATCTGACCGCATATTCAGGAAAATATgaaaacaacacatacacaaatccAAAGCCAATACAACAACAACTATGTGCtgcaaatgaaaaaatatgttGCTAAATGCCTAAACTAATACGCAACtgcaaactgctccaaacacaTATAAACTAAAAAACAATCACTGAATACAAGCGCATTAAGAGGGATTGACCACACCTAGAGGATGAGTCACACCACGCAAACTATTTAAATTCATTTTTACAATGACAATGTAGTAATTGTAATTTCTCTGCAGTTACATCTGCCATGTCGTGTTGTACATTTGGATGGATTTGGTTGGCTGTCAGTGTTTCTATCGTCCATCAAATCACTTTGAAAGTGATCCCAAACAATATTGTTTACCACTGTTTGtcattattacatatatatcATGTCACGCTATTTCACTTAGCACTCCTTTTTTAGACAAGTAGATCTTCTGTTGTTTTGACTAGATATGCAGTGTTTAAGTTGCATATGTTTTGGGGGTTTGTGCATTTTTTACTTGGAATCTTCTCTGCATGTTTCTGCTAGCCTAAGTGCTATGAACCACTGTAGCGCATTTGCCCAGGTCGGCCACTGTATGAAACAGCATTGATCATATCACACGCATAACAGCAACATGAATGTCCAAAAGGCAAAGTGATAATTATATTCAAATGGCTACGGTAAAGATATCTTTACCATATCTGCCCCATCTGTTTGGGCCAGAGGACTAAATATTGTAAACTCATGCTCTTAACTGTAGAATTAATCGTcattcaaaaatgtgaaaaaccCTGTTTTAGATGATATGTGTgccctagttttttttttttttttttattgcataatCCAGCATATTGTTATTCATAGTGACTGTGGGGCTCATTTGGAATTGAAGGTACATGCTACTACATTTaacttctttttaaaaatgacaatGATCATTACTCATGAGTTTTGAGTGTAGTGTTTCCTGTTTATACTGCTGTTACTGTtgcaaaaaaaatcaacaaatttCCCAATGCCATTACTTCAGGAATAAAACTATTTGTTAGTAAATGTAAGTGCATGTAACCTTGTTCATGATAATGTTGTCTTCATGAAAGTAAAATATGTGCGAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232911 lncRNA downstream 133477 1040798 ~ 1041051 (-) False megf10
TU232906 lncRNA downstream 135718 1038339 ~ 1038810 (-) True G171848
TU232904 lncRNA downstream 137002 1036831 ~ 1037526 (-) True G171846
TU232895 lncRNA downstream 165101 1008831 ~ 1009427 (-) True G171839
TU232879 lncRNA downstream 176574 994614 ~ 997954 (-) False prrc1
TU232974 lncRNA upstream 270 1184173 ~ 1185802 (-) True G171886
TU232976 lncRNA upstream 8667 1192570 ~ 1193912 (-) False G171886
XR_005636741.1 lncRNA upstream 20328 1204231 ~ 1207353 (-) True LOC120545753
TU232986 lncRNA upstream 44325 1228228 ~ 1283125 (-) True G171893
XR_005636707.1 lncRNA upstream 71261 1255164 ~ 1256010 (-) True LOC120545526
XM_039779104.1 mRNA downstream 27941 1040801 ~ 1146587 (-) True megf10
XM_039779103.1 mRNA downstream 140599 1012144 ~ 1033929 (-) False LOC120545116
XM_039779102.1 mRNA downstream 140600 1012144 ~ 1033928 (-) True LOC120545116
XM_039779100.1 mRNA downstream 166340 994437 ~ 1008188 (-) False prrc1
XM_039780306.1 mRNA upstream 208861 1392764 ~ 1423159 (-) False syk
XM_039780304.1 mRNA upstream 208861 1392764 ~ 1423159 (-) True syk
XM_039780305.1 mRNA upstream 208861 1392764 ~ 1423041 (-) False syk
XM_039779188.1 mRNA upstream 322651 1506554 ~ 1522474 (-) True reep5
XM_039779782.1 mRNA upstream 471445 1655348 ~ 1715953 (-) True nrg1
TU232928 other downstream 3739 1170203 ~ 1170789 (-) True G171868
TU233144 other upstream 412613 1596516 ~ 1602156 (-) True G172032
TU233470 other upstream 1800919 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 2702685 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 2957950 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 3586914 4770817 ~ 4771303 (-) True G172920

Expression Profile