RNA id: XM_039778853.1


Basic Information

Item Value
RNA id XM_039778853.1
length 1699
RNA type mRNA
GC content 0.48
exon number 8
gene id gfi1b
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9993598 ~ 9999567 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTAAAGGCCCCGTGTGTTTTTTTACGCAAATTTCCACCTGCAGGTTGGCCATTTCATTGGTTGAAAGCACAGTCAGATTCTCCTGCGAAATTATCTGATTGAAAATCAGggaggggagaaaaagagagagcaacaagtgtGATGCTTTTAGGCTGCTTTGCTTTTGTGACTTTTAAGGAAAGGATTTTACTCTGCAGAGCTGCTTCACCCCAggacatcattattattattagtaatagtagttaGTAGCCTATTATTGGGCCTACTGCACATTTCATTTCGACGGGGAGCTGTTGAGTTAACGGATCAATATGCCCCGGTCATTTCTGGTGAAAAACAAAAGGTGCACGTCCTATAATGTTCACCGATCATATGAAGACGAGCCGAAGGCCCCCACAAGTACAGAAGACCGACTAGAGGTCCAGAGCACGGACTCTGAAGACAGGCCTCAGTCGGAGGGGCAGTCTTCCCCTGCGGACCACTGCTCCTTTGAAAAGGACGAGGCAGAGCTTGAATGTCCCTTACCTGCTCACCCAGAGCCAACCAGACCCCCCATGGCTCCCACGCAGCCATACTACCTAAATGAGCCTCACATGGCCGGATTCCCTCCCTACTACAAGCCGCCGTACGCCTGGGAGCCGGTGCCTTCCTCCTACAAGCTCCGTCAGATGAGTTTTAGCCCCACAGTGCTGCAGCACGCCAGCAATCTGTACGGCAGTCACATCAGCCGCAGCCCGCAGCCTCCGCAGCCTCCGCAGCCTCTGGACTGCAGCACGCACTACTCCCCCACCTCCAACACCTACCACTGTATCACCTGTGAGAAGGTGTTCTCAACGCCCCACGGGCTGGAGGTTCACGTCAGGAGGTCGCACAGTGGAACCAGACCTTTTGGCTGCAGCATCTGCAGGAAGACCTTCGGCCACGCAGTCAGTCTGGAGCAACACATGAACGTCCACTCGCAGGAAAAAAGCTTTGAGTGCAAGATGTGTGGCAAATCATTCAAGCGCTCCTCCACTCTCTCCACGCACCTGCTCATCCACTCGGACACGAGGCCTTACCCCTGCCAGTACTGCGGCAAGAGGTTCCACCAGAAGTCTGACATGAAGAAACACACGTACATTCACACCGgtgAAAAGCCCCACAAGTGCCAAGTGTGTGGTAAAGCGTTCAGCCAAAGCTCCAACCTGATCACCCACAGCAGGAAACACACAGGCTTCAAACCGTTTGGATGTGACATTTGCTCCAAGGGCTTCCAGCGTAAAGTGGATCTCCGCAGGCACCACGAGAGCCAGCACGGCATGAAGTGAAGAGGAAGCCAGACCAGAGCCTGTGTTAATGTGTATAATACATTTCTATTCAAATAATAAGCTGATATGGAATTCGGATTGAAGGCTATTTAACTATAGCAAAGTCTCATCAGTATAACGAATAAATTAATTCAATTGTATTAGTTAATATAGTGGAAGTGATCTTTCAAAAGTTGTGTTTACATGTGGATGAATGGGAGATGTGCAGTTGTCATTTAGAATCAATGTACTTGGGTGTAAGGCTTTTGATAACAAAAGCAACAAGAACGTTATTTTTTGGTTtcatataatttatttaaagtgtGCTTGAATATGGCATTGTATATTATGTTGGCtggagtctgtgtgtgagttgATAAATGCTTTTAATTGAAATAAAGGGTGAAAAGTA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09223 GFI1; growth factor independent 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235681 lncRNA downstream 90591 9861001 ~ 9903007 (-) False grin1a
TU235693 lncRNA downstream 196627 9795843 ~ 9796971 (-) True G174116
TU235695 lncRNA downstream 196627 9795843 ~ 9796971 (-) False G174116
XR_005636702.1 lncRNA downstream 655180 9337767 ~ 9338418 (-) True LOC120545476
TU235467 lncRNA downstream 695120 9297725 ~ 9298478 (-) True G173944
TU235726 lncRNA upstream 45065 10044632 ~ 10045354 (-) True G174139
TU235734 lncRNA upstream 88715 10088282 ~ 10088523 (-) True G174143
TU235759 lncRNA upstream 195509 10195076 ~ 10283957 (-) True G174166
TU235763 lncRNA upstream 237178 10236745 ~ 10239274 (-) True G174168
TU235760 lncRNA upstream 244160 10243727 ~ 10284037 (-) False G174166
XM_039780816.1 mRNA downstream 9573 9972694 ~ 9984025 (-) True gtf3c5
XM_039778921.1 mRNA downstream 21748 9966088 ~ 9971850 (-) True LOC120544999
XM_039778920.1 mRNA downstream 22363 9966088 ~ 9971235 (-) False LOC120544999
XM_039778925.1 mRNA downstream 29982 9958707 ~ 9963616 (-) True LOC120545003
XM_039778918.1 mRNA downstream 38861 9950160 ~ 9954737 (-) True LOC120544997
XM_039779363.1 mRNA upstream 97684 10097251 ~ 10108289 (-) True gtf3c4
XM_039779364.1 mRNA upstream 143503 10143070 ~ 10150003 (-) True barhl1b
XM_039779917.1 mRNA upstream 201499 10201066 ~ 10226381 (-) False gsna
XM_039779918.1 mRNA upstream 201499 10201066 ~ 10226379 (-) True gsna
XM_039778871.1 mRNA upstream 379528 10379095 ~ 10395744 (-) True adra1ab
TU235686 other downstream 119253 9861001 ~ 9874345 (-) False grin1a
TU235701 other downstream 150099 9842812 ~ 9843499 (-) True G174120
TU235399 other downstream 922390 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 1359699 8625482 ~ 8633899 (-) False LOC120545754
TU235162 other downstream 1635571 8357723 ~ 8358027 (-) True G173727
TU235744 other upstream 97809 10097376 ~ 10108283 (-) False gtf3c4
TU235941 other upstream 1161673 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 2357361 12356928 ~ 12357890 (-) True G174439
TU236126 other upstream 2390988 12390555 ~ 12391484 (-) True G174442
TU236617 other upstream 4480895 14480462 ~ 14483417 (-) True G174799

Expression Profile