RNA id: XM_039778897.1


Basic Information

Item Value
RNA id XM_039778897.1
length 6091
RNA type mRNA
GC content 0.50
exon number 11
gene id abl1
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19449563 ~ 19486106 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCTTTGACCTCTGAAGCACCCAGGATCTATTTATGCATGATAAACTGAGACATACTGGAGAAATACGGATCTGCATAGGTGACCCGCATCACCCATACTACAGGAGAGGACAGAGTGAGCCAGGGAAAGGGGTTCCTGTCTTCTCCTGACCCCCTCCCTGCCTGTTGACCAACTGTCGGACGGTGAGCAACTGAGTCCGGCTTGGAGAGTCCCGGCTGCGGCCTGGCACCCTGCCCTTATGGGGCAGCAGCCGGGGAAGTTTGTAGGGGACCAGAGGAGACCTAGTCTGCCAGCCTTCATCAAGGGTGGAAAGAGAGAGTCGTCACGCCATGGGATCCATCCCTGTAACGTTTTTGCTGTGCATGaagctCTCCAGAGACCAGACTTTGAGAGTCAGGGTCTGACAGAAGCGGGCCGCTGGAACTCCAAAGAGAACCTTTTGGCTGGACCCAGTGAGAATGACCCCAACCTGTTTGTTGCACTCTATGATTTTGTGGCCAGTGGTGACAACACACTCAGCATAACTAAGGGAGAGAAGCTGCGTGTGCTCGGTTACAACCACAACGGCGAGTGGTGCGAGGCACAGACCAAGAATGGCCAGGGTTGGGTGCCTTCCAACTACATCACCCCTGTCAACAGCCTGGAGAAGCACAGCTGGTACCATGGCCCCGTGTCACGCAACGCTGCCGAGTACCTGCTCAGCTCGGGCATCAACGGAAGCTTTCTGGTCCGCGAGAGTGAGAGCAGCCCCGGCCAGAGGTCCATTTCTCTGCGGTACGAGGGGAGAGTCTACCATTACAGGATTAACACTGCGTCTGACGGCAAGCTGTACGTGTCGTCGGAGAGCCGTTTCAACACGCTGGCGGAGCTGGTGCACCACCATTCCACGGTGGCCGACGGCCTCATCACCACGCTGCACTACCCGGCGCCGAAGCGCAACAAGCCCACCATCTACGGAGTTTCTCCCAACTACGATAAGTGGGAGATGGAGCGCACTGACATTACCATGAAGCACAAGCTGGGGGGGGGCCAGTACGGGGAAGTGTACGAGGGTGTTTGGAAGAAGTACAACCTCACCGTGGCGGTCAAGACACTAAAGGAGGATACGATGGAGGTGGAGGAGTTTCTCAAGGAGGCCGCTGTTATGAAAGAGATCAAACACCCCAACCTGGTACAACTGTTAGGTGTGTGCACACGCGAGCCGCCGTTCTACATCATCACAGAGTTCATGACCCATGGTAACCTGCTCGACTACCTGAGGGAGTGCAACAGAGAGGAGGTCAATGCAGTGGTGCTGCTCCACATGGCCACACAGATCTCCTCTGCCATGGAGtacctggagaaaaaaaactttatacaCAGGGACTTAGCTGCCCGTAACTGTCTGGTCGGGGAGAACCACCTGGTAAAGGTTGCAGACTTCGGCCTGAGCAGGCTAATGACTGGAGACACTTACACAGCTCACGCTGGGGCCAAGTTCCCCATCAAGTGGACTgctccagagagtctggcctacAACAAATTCTCTATTAAGTCTGATGTCTGGGCATTCGGTGTGCTGCTGTGGGAGATCGCCACCTACGGCATGTCTCCCTACCCCGGCATCGACCTGTCCCAAGTGTACGAGCTGCTGGAGAAGGACTACCGTATGGACCGACCAGAGGGCTGCCCCGAGAAGGTCTACGAGCTCATGAGGGACTgttggaggtggaacCCCTCAGAACGTCCATCTTTTGCTGAAACCCACCAAGCCTTTGAGACCATGTTCCAGGAGTCCAGCATCTCTGATGAGGTGGAAAAAGAGCTGGGCAAGAAAGGGAAGAAGGCGACATTAGGCCCCGTCCAGCAGGCTCCAGAGCTGCCCACCAAAACCAGAACTCTCCGCAAAAACATGGACAACCGGGATGGAGATAGTCCAGACCCAGCGGAGCTGGAGGTAGCTGTGTCATCTCCCATGCTCCCCAGGAAAGAGCGCCCCCTCCTGGACAGTAACCTGAATGAGGATGACCGCTTGATTCCCAAAGACAAGACCCGTGGCAGCGGCTTTCTCAGTCtcataaagaaaaagaaaaagaatgcaCCAGCTCCGCCCAAACGCAGCTCCTCTTTCAAAGATATGGACGTCCACTCTGACAGGAGGGGCGTGACTCCAGATCCTCGAGACAGCGACGGCTTCAACAACGGTGCATCATTGGCCATTAATGACATCACACATGGCCTCGACCCTGCAAAGTTCCTGGGTAACAATAATGGGGCAGGAGGCATCCCCAACGGGGCTCCTACCTACCCAGGACCTTTGTTTCCTAGGAAGAAGGGAGCTCCTGCGGTGCCTGGCCCTGGAGGAAAAGCAGCTACGACACCGCCCAGCGAGGAGGAGTCCATGTCGAACTCGAAGCGTTTTCTCCGGTCCTCTAGCATGCACACCGGCTCAGATGGCACCGAATGGAAGTCTGTCACACTACCGCGAGACCTCGGCCAGCGCCACTTTGACTCAGGCACCTTTGGGGGCAAGCCAGCTCTTCCACGCAAGAGAACCAGTGAGCAAAAAGGGGAAAACAACCGTCGAATGGGCACCCTGACTCCCCCGCCACGTCTGAACACCTCATCGGATGGTTCCTCTCCCTTCTTAGGCAAAGAGACTGATGCCAGTCCTGGTTCCAGCCCTCAGGCGTTAACACCTAAGGTGGTCAGGAGGCCAGGGTTGCCGGGATTGGAGAACTCCAAGACCAGCGCTCTCCATGCTGAGCTTCTCAAGCCCAATGTGTTCCCCGCTTTAGGGGCAGCGGGAGACGAGTGCAGGGCCCGCAGACACAAGCACGGTGTGGACTCTTCATCCGTCAGGGAAAGAGGAAAGTTACAGAAACCCAAGCCAGCCCCACCTCCGCCACCCACCAATGCCAAGACGGGCAAGATTTCCCGCAGCCCCACTCAAGAACTCCCCACCACCTCAGACATTAAAGCTAAGggcctcccctctctctcagagCCTCACCATACAACCACTGGCAGTGACCAAGCCCGCTCCCCCCTCAGTGAAGGCTCCAAGAAGCTGTCCATGGGCTCCACCTCCAAACCTCAACCGTTAAAGACCTCCACCTCAGCGAGCGCCTCCCTCTCCTGCCAGAGCCTAGGAGGCTTCCCTTCCTCTGTCACCTCCCCCGGCGATCTGAGCTCACCCACTGCCTTCATCCCCCTAGTGAACACCCGGCGCTCCCTCCGCAAGACTGCACCCCGCCAGGCTGCCGAGCGTACCCCCAACTCGGCCGTGACGCGCGAGATGGTGCTGGAAGGCACCGAGCTGCTCCGCGCAGCCATTTGTCGCAACTCGGAGCAGACGGGTAGCCACAGCGCTGTGCTCGAGGCCGGCAAGAACCTGTCGAAGTACTGCGTGAGCTACGTCGACTCCATACAGCAGATGAGGAACAAGTTTGCCTTCCGCGAGGCCATCAACAAACTTGAGAGCAGTCTGCGTGAGCTGCAGATCTGCCCCACCGCCACAGGGGGCGCCAACGCACAGCAGGACTTCAGCAAGCTGCTGTCCTCTGTCAAAGAGATCGGTGACATTGTTCAGAGGTAGCGCCATAAAATCCTAAACTACCAAGATGTAAAACTGATATCAACCGTATCTTACCAAAACCCTTTTTATCGGAGCATGCGCACGTACTGCGGCCCATGCCGAGCTTGTGTCCGAGATCTGAGGGTAAAGCCTGCGGTTGAGCAGCAACAGAGCGTAGGTCTCACACTACAGCGCGTTCTGAAACACTTAAGCCTGTGGTTATTGTGGATGGAATCAAAGGAATCTCTCTGTAGACGTCGTCTGACAGAGTTTGCAATATTGAAAAGCCCTAACCATGACTAAACGGTGTCTTTTGGCCTTCATGAGTGGCAAGGGACCAATTCTTTATCAACATGACTTTTCACCAATCATTTATGAAATGATCATGTCTAATCTATTGTGGTTGTTTTCCCCTTTATCGATGACACTAGTACGAAAGAGGCCTGTGATACTCGTTTTCCATCACTGTTTagtgtttgatttttttcatcGACGACAatgagcaaaaacaaaacacttaacCTCATCTTGTTCTAGGATGCCTTCTAACATTTTAAGCGACTGATCTCATTTTTCCATTTTCACGTGTAAGGATTAGGGAGCTTCTGGAATCACACAGTGTTTATAACCTGATGCCTCCAACACATGCCAACGTATTGCATTGCTTTGTACCATTTCGTCAGTGATTGGTTGTGTGTCGAGTGATGAAAACGTGTCAGTGTTTGGTCTGTATGAATGCTTTTTTGCAGTATTTGCAACCATGtgccataaaataataatgggAGCAAGCAAATGAGGCAGAATGAACTTCTGGCCTTTACCTTTTTTGCTTCACTGCACACTTTGGTAACAAATAGTGCCTTAAACACTTTTGGCAGTGCTGTACACTTTACAAGTGCAGAAATGTGGCCAAGTGGTTAAGAATAGCTGTGTGAATTTGTTTGATTTTAAGCTTGTGACTGCCATACCAAAAATCTTTGTCTCCAGTCTATACTGGAGAGGGACCAGGGTGCACGATCTGCTATTTAGTGGATCTGACTGTTATGTTCTTAGACTGGACCgctttatttttataaaactgATTCAACTTTCCTTTCATGCCAGTCACAAAAGCCATCAGTAGCAGCTCGACCTTGCAGCAGCATGCTGTTTGATCTGTAAGGAGGGTTCAGAGACTGAAACGGTGTTTCTGACCACTGATTTGATGGAGGGTTTGTGTCACATGGTCTAAATGCTGTTTCAGAGGCCTTTCCACCCCAGCAGAAAAAGAAAGCGATGTCCTGGGGGAAACACTGGACTGAAATGTTAATGGATCTCTCATTTGCTGTCttataaaataatgaataagtgAGAAACTGAATATTGTAGACTAAAAGAACCCATGATATTCCACTGTAACATCATACGTTCCTTTATGCTAGTCAGTAAATGTTGGACATTTTCAGTATTCGTGCTGTAGTCGTCTCACCCGATGTGCCCTGTCTGACTGCGATGCCTAACATGTCAACTGCAAGCTGCCTTGACTTCAACACGGTACTGTCAgtgttggcttttttttttttaattccactCCTTTACCAACCATACCACTAGTCGAAGCTTCCTCACAAATTTTGTAGAAAAACTTTGCTTTCCtttgtaaatatgtttttttgtctgtttctctctagCCTTGGTGCAATTTTTGTTGCAATAAAATACAAAGCAGTTGTGCtacttgaaatacattagtctTTTCTACACGCGTGATGTTTTTCTTCCTTAACAGTAATTAATATGCAATCTTGTTTATTAAAGCCCGTTTCTGTAGAAGCAATAACTGATCACAAAACAGACGCACAGCAACAGGTtatgtataatttattttttctgtcTAGAGTATTTTGTCATTAAAATCAAAaggtcaacattttaaaatcataTACACTCAAGAACGCATTGAAATGTTAGCACAGCTCCTTAAAAATTTATACATATGtactttttttgtacttgtgGACAGACAAAAGCAGGAAGTGGTCACAGGAAAAAGGAAGACCCAGCCCACCAACTTCCCACAATAATAAACCAATCCCCACTCCCCAAAAGTTAAGACAGCGATGCAGGCCCCTCCCATGTGGAGGAGCGATGATGGGGCGGACaaagaaaatataaacataACAGTGCCCCATTCTCCACTCCATACAGAAATGAGAGGAATCAGAGTTTGCAGACATAAATACTAGTTTCCACATAAGGTCAATCCACTACCTCCCCTCAACCAATCAACAGGTTCAGTAGTGTGCAGACAGGGGGGGGTGTTTAGGTGTCTGTCCTttacatacatttattaataGAAACTATGTTACAGAATTTCCCAAGCATGAATTACAGGCAACCCACTAGCACATGAACTGTACAGATCTTGGCAGAGCCAGCAAATCAATATCTAAATCCCAAGTAGCGAGGTCATCACCGATAGTTTAGAAGCAATATATACAGCTGTCCAATCAGGGAAACACTATGGTACAGAAAAattgtactttaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238449 lncRNA upstream 47196 19399170 ~ 19402367 (+) False LOC120545529
TU238220 lncRNA upstream 595015 18851078 ~ 18854548 (+) True G175973
TU238221 lncRNA upstream 612809 18836175 ~ 18836754 (+) True G175974
TU238139 lncRNA upstream 762835 18676044 ~ 18686728 (+) False srsf9
TU238127 lncRNA upstream 775598 18670383 ~ 18673965 (+) True G175925
TU238472 lncRNA downstream 2204 19488310 ~ 19492082 (+) True G176173
TU238477 lncRNA downstream 9930 19496036 ~ 19502184 (+) True G176177
TU238529 lncRNA downstream 77140 19563246 ~ 19565919 (+) True G176225
TU238530 lncRNA downstream 80833 19566939 ~ 19567169 (+) True G176226
XR_005636770.1 lncRNA downstream 104636 19590742 ~ 19593712 (+) True LOC120546000
XM_039778900.1 mRNA upstream 1964 19441576 ~ 19447599 (+) True exosc2
XM_039779932.1 mRNA upstream 47184 19380250 ~ 19402379 (+) True LOC120545529
XM_039780434.1 mRNA upstream 127324 19318972 ~ 19322239 (+) True mlana
XM_039780433.1 mRNA upstream 127324 19318977 ~ 19322239 (+) False mlana
XM_039780486.1 mRNA upstream 174930 19273397 ~ 19274633 (+) True LOC120545863
XM_039780631.1 mRNA downstream 30704 19516810 ~ 19525324 (+) True ddx54
XM_039779419.1 mRNA downstream 408010 19894116 ~ 19900260 (+) True lman2la
XM_039779421.1 mRNA downstream 425764 19911870 ~ 19914680 (+) False LOC120545241
XM_039779422.1 mRNA downstream 425764 19911870 ~ 19914680 (+) False LOC120545241
XM_039778791.1 mRNA downstream 443465 19929571 ~ 19943843 (+) True pax8
TU238450 other upstream 62121 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 725778 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 762835 18676044 ~ 18686728 (+) False srsf9
TU238154 other upstream 762835 18676044 ~ 18686728 (+) False srsf9
XR_005636603.1 other upstream 901422 18536631 ~ 18548141 (+) True myo1hb
unassigned_transcript_963 other downstream 31129 19517235 ~ 19517306 (+) True trnac-gca_32
TU238926 other downstream 1460578 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 2792774 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 3010307 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 3045802 22531908 ~ 22537337 (+) False G176870

Expression Profile