RNA id: XM_039778912.1


Basic Information

Item Value
RNA id XM_039778912.1
length 2413
RNA type mRNA
GC content 0.42
exon number 1
gene id LOC120544992
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 7295509 ~ 7297921 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCGCAGATCTACCAGTGTACAGATGAGTGTAGCCCACATGTTGTAAAGGGAATCCCCATTCACTGCAGATCAGCAAGCAAACATGAAGAAAGGGAACTACAGTAAGCGTTTGGATCAGTCCTCGTTTTTTTCGTCTTGGATGAGAAAGTGAAACTATTTCACATTCACCATCTCTTCGAGGGTAAATGGCACAGCAACAAACCGTAATGGATCGGAAAAAACTCTGctgttccatctgtctggatctactgaaggatccggtgactattccctgtggacacagctactgtatgagctgtattaaaagccactggGATGAAGAGGATCAGAAGAAAGTCTACAGCTGTCCTCAGTGCAGACAGACCTTTGAACCAAGGCCTGCCCTGAATATAAGCACCATGTTGgcagatttagtggaggagctgaagaaggcAGAACTGGACCCCCAGCCTCACTCTGAAGTTGTTCCATTAAAGAAACAAAAGCTGGGGGGGGCTTCCACACAGTTTCCGGAGAAAATCTGCACTCATCAGTTTGAGGTTTTCTGCCGCACTGATCAACAGTGTATGTGCTATAAGTGCGCATTTGAACAACATAACGGCCACAACACTGTTTCAGCTGCAAAAGAAATGGCCAAGAGGCAGAAAGAGCTCGGGGGGATTCGGcaaaaaaacaaggaaagacTCGAGAATGTAGAGAAATATGAGAAGCAGCTTCAGAAGGAGGTGGAGTATATGAATCGCTCTGCTGATAAAGCTTTGGAGAATTGCGAGACGATGTCCACTGAGCTCAACCGTCTCACGAAGAAAAACGCTGATGTAAAGCAGCAGATCAAAAAGGATCAGGAAAGAGAAGTGAGTCTGGCCAAAAAGCAACAGAAGAAGCTGCAGCAGGAGCTTGCtgagctgaggaggagggacGCTCATCTGGagaaactctctcacacacaagaCAACATTCAGATTTTACAATCGCTGTCAAATATCAGTAAATCTCCCATCATACCCGTCATCAATATCCGCCCTCTGCAACACTTTGATGATGTGACAACAACAGTGTCCGATGCCATAGCTAAAATAAAGGACAGTTATGGTAAGGAATTGAACAAGATCTCAGGGGAAGTGAGTAAAGTATATGTTTTACTGCCACAAGACCCCAAGTTCCAAAtggatccaaacacagccaGCACGAAGATGGTACTATCTGAAGAGAACAGAAAAGCAACCTCAGTCCAAGATGGAAAGTCATATCctagtcacccagacagattcacgGACAGGCCTCAGGTTCTGAGTAGCAGACCTCTGACGTCTGGACATAGTTACTGGGAGGTGCTGTGGGGTGGCTTAGGAGTTACAGTTGCTGTCGCATACAAGGGCATTGCTAGAACAGGAGAGGAAAGTATCTTTGGAAACGATGACAAGTCTTGGGCATTAGAGTCTGTGGCCAAAGGTGCTTATTCTTTTAATTTCAAACATAACGGTACGAAAATTCCCCTTTCTGGCCCTCAATTCTCCAGAGTAGGAGTTTACGTGGATTACAatgcaggtattctgtccttctacagtgTCTCTGAAACTGAAACTATCACTCTCCTCCACAAAGagcagaccacattcactcagcctctctatgCCGGACTGGGAGTTTATTATAAGGGGTCTACAGCAGAGTTTTGTGCCGTCAAGTAGACAAGAGTTAGATTTTACCCAGGGAACAGAGAAGGCTTTCGCATGACAATTCATTTAGTATGCCTGATGCAACCTACATGAAACCTGTTTGTGTGGTGTATATACATACTTCTCTAATTTGTTCTATATTTTTGCATTGTTGCTGTAATATTTTCTACTCTGCAGGCTACTTGGGCTTTAATTGAGCAGCACTACACGTTTAGTAGTTCATTATGGGTTATTTTTCATATTGTCACATTGTCAGTGTATTCAGAAAAGTAAGGTTAAGCCTTATTTcttttaagtcatttttatttaatcatcatTGAATTATTTTCCTCCACCTTGCTGACATACATGTTTAAcatactgttgttgttgttgttgtgtataAAGTGAATACGTAGATGGAAAGATAAGTCCTAAAATAATGTGCTGATTCATTATGTACGGTCAGTCAAGTAAAGTGGTTTTGTTTTCCTTGCAGTATTTGCTTGTCTGGTCTTGTCTGTCTCTGGGAGTCCCAGGctacatgttttttgtttttttttctctgcttccTGCTGTATGAACTAAACCACATGTCGTTTTAATAGTTTCATATTTgatcatatttgtttttttcctgtcacTTTGTAGTTTAGAAAAGTGAATCTAACTAGTAGCATCATTGTTTATTTAATGTGAACCTGATTGGATATGTTAATAAAgtccagcccggtctcatggaagttcgtgtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234924 lncRNA downstream 1083 7294030 ~ 7294426 (-) True G173526
TU234851 lncRNA downstream 133292 7161724 ~ 7162217 (-) True G173467
TU234793 lncRNA downstream 796362 6498867 ~ 6499147 (-) True G173418
TU234785 lncRNA downstream 799610 6455597 ~ 6495899 (-) True G173410
TU234726 lncRNA downstream 921020 6374205 ~ 6374489 (-) False LOC120544971
TU234957 lncRNA upstream 79206 7377127 ~ 7378374 (-) True G173550
TU234961 lncRNA upstream 178620 7476541 ~ 7477005 (-) True G173554
TU234969 lncRNA upstream 189676 7487597 ~ 7487905 (-) True G173561
TU234972 lncRNA upstream 238444 7536365 ~ 7536616 (-) True G173564
TU234983 lncRNA upstream 330620 7628541 ~ 7628753 (-) True G173573
XM_039780365.1 mRNA downstream 20542 7188195 ~ 7274967 (-) True LOC120545786
XM_039780364.1 mRNA downstream 68957 7188195 ~ 7226552 (-) False LOC120545786
XM_039778878.1 mRNA downstream 921026 6368307 ~ 6374483 (-) True LOC120544971
XM_039780192.1 mRNA downstream 933406 6353213 ~ 6362103 (-) True txnl1
XM_039779250.1 mRNA downstream 947859 6328407 ~ 6347650 (-) True nars1
XM_039780067.1 mRNA upstream 26621 7324542 ~ 7361945 (-) False LOC120545581
XM_039780065.1 mRNA upstream 26621 7324542 ~ 7361945 (-) True LOC120545581
XM_039780066.1 mRNA upstream 26621 7324542 ~ 7361789 (-) False LOC120545581
XM_039780068.1 mRNA upstream 26621 7324542 ~ 7360399 (-) False LOC120545581
XM_039779919.1 mRNA upstream 82523 7380444 ~ 7393965 (-) True kcnv2a
TU234856 other downstream 135422 7152870 ~ 7160087 (-) True G173470
XR_005636815.1 other downstream 474643 6820812 ~ 6820866 (-) True LOC120546140
XR_005636634.1 other downstream 1894831 5396633 ~ 5400678 (-) True LOC120545230
XR_005636624.1 other downstream 2398152 4849948 ~ 4897357 (-) False odf2a
TU235162 other upstream 1059802 8357723 ~ 8358027 (-) True G173727
TU235313 other upstream 1327561 8625482 ~ 8633899 (-) False LOC120545754
TU235399 other upstream 1772241 9070162 ~ 9071208 (-) True G173900
TU235701 other upstream 2544891 9842812 ~ 9843499 (-) True G174120
TU235686 other upstream 2563080 9861001 ~ 9874345 (-) False grin1a

Expression Profile