RNA id: XM_039778918.1


Basic Information

Item Value
RNA id XM_039778918.1
length 1778
RNA type mRNA
GC content 0.52
exon number 11
gene id LOC120544997
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 9950160 ~ 9954737 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATGATGGTGAAGCTAGGGATTTTGGTAGCTGTTGCCGTGTTTCTGGAGACGGTCTCTGCGGCCTCTCTTGGAGTGGTGTACACAGAGGGAGGTATGGTGGAGGGTAAGAACATTCGTATTGGCCTTTTCCGTCGCATGGATGTCTTCAAGGGGATTCCCTTTGCTGACATCCCTGGTAGATTTGAGAAACCAAAGCGTCACCCTGGCTGGGACGGTATTCTGAAGGCCACTGAATACAGGCCGAGATGCATTCAGGTGAACATGTTGATGTCTGACACCAGAGGCAGTGAGGACTGTCTTTACCTTAACATCTGGGTTCCTCACGGCAGCAAAGTGTCCACTGGTCTGCCGGTCATGGTCTGGATCTATGGGGGAGGCTTCCTGGCTGGGGGCTCGATGGGTGCTAACTTCCTGGACAACTATCTGTACAACGGGCAGGAGATTGCAGACAGAGGAAATGTTATTGTGGTGACACTGGGATACCGTGTGGGCACTATGGGCTTCCTGAGCACTGGAGACTCTGACTTACCCGGAAACTACGGCCTTTGGGACCAGCACGCTGCCATCGCCTGGGTGAACAGGAACATCCGCTCGTTTGGAGGAGACCCTGACAACATCACCATCTTTGGAGAGTCTGCAGGTGGAGCTAGTGTCAGCTTCCAGACTCTCACTCCCCACAACAAAGGGCTGTTCAAGAGAGCCATCTCCCAGAGCGGTGTTGCCCTTTGCCCATGGGGTATTAATAAGAACCCACGCAGGTTCGCTGAGGAGGTTGCTCTAAAGGTCAACTGCCCCACAGATCAAAACATGGCTGCCTGTTTGAAGATGACTGATCCTGCTCTCCTTACATTGGCGGGCTCTCTCAGTCTGTCCAGCTCACCAGATCaCCCACTTGTATGGAACCTGTTCCTGTCTCCTGTGATTGATGGGGACTTCCTGCCAGATGAGCCTTCCAAACTGTTCCACAATACTGCTGCCATCGACTACATCGCTGGAGTCAACGACATGGATGGACACCTGTTTACTGGTTTAGATGTTCCTTCAATCAACTCACCCCTGGTGGACACCCCTATTGACGATGTGAAGAGGCTCCTGGCTTCTTACACTAAGGAGAAGGGCAAGGCTGGTTTGGACAACGCTTACTCCACATACACCTCCACCTGGGGCTCAAACCCCAGCAAGGAGACCATCAAGAAAACCGTTGTGGAGATTGGAACAGACTACATCTTCCTGGTTCCTACTCAGGCTGCCCTCTACCTTCATGCTGCCAACGCCACAACTGGCCGTACCTACTCGTACCTCTTCTCTCAGCCCAACCGTATGGGTGGCATTGGTAGGCCCTACCCCAGCTGGATGGGAGCCGACCACGCTGATGACCTGCAGTATGTGTTCGGAAAGCCTTTCACCACACCACTGGGGTACTGGCCTCGCCACCGTGACGTCTCTGGCTACATGATCGCCTACTGGACCAACTTCGCCAAAACTGGGGACCCTAACAAAGGAGAGAAGGTGCCAGTGACCTGGCCTAGATTCACCAGCACTGGACACCAGTTCCTGGAGATCAATTCTAAGATGAACAAGAACTATGTAGGACAGAAGATGAGAATGCGTTATGTGCATTTCTGGTCTAGCGTCCTACCCAACCTTCCCATATCCTTCTCAGAGTAAAGACTGTGTGCAATCACCTGTGCACCTGAAATGTGGACCTAAAGACCTGAAGTATTAAATTAGTATTGGttcatgaaaaataaattgatGACGAATACAAATTATATT

Function

GO: NA

KEGG:

id description
K12298 CEL; bile salt-stimulated lipase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235681 lncRNA downstream 47153 9861001 ~ 9903007 (-) False grin1a
TU235693 lncRNA downstream 153189 9795843 ~ 9796971 (-) True G174116
TU235695 lncRNA downstream 153189 9795843 ~ 9796971 (-) False G174116
XR_005636702.1 lncRNA downstream 611742 9337767 ~ 9338418 (-) True LOC120545476
TU235467 lncRNA downstream 651682 9297725 ~ 9298478 (-) True G173944
TU235726 lncRNA upstream 89895 10044632 ~ 10045354 (-) True G174139
TU235734 lncRNA upstream 133545 10088282 ~ 10088523 (-) True G174143
TU235759 lncRNA upstream 240339 10195076 ~ 10283957 (-) True G174166
TU235763 lncRNA upstream 282008 10236745 ~ 10239274 (-) True G174168
TU235760 lncRNA upstream 288990 10243727 ~ 10284037 (-) False G174166
XM_039778917.1 mRNA downstream 1363 9942713 ~ 9948797 (-) True LOC120544996
XM_039780837.1 mRNA downstream 11210 9923206 ~ 9938950 (-) True zgc:92275
XM_039780417.1 mRNA downstream 47691 9866686 ~ 9902469 (-) False grin1a
XM_039780418.1 mRNA downstream 47693 9861002 ~ 9902467 (-) False grin1a
XM_039778925.1 mRNA upstream 3970 9958707 ~ 9963616 (-) True LOC120545003
XM_039778921.1 mRNA upstream 11351 9966088 ~ 9971850 (-) True LOC120544999
XM_039778920.1 mRNA upstream 11351 9966088 ~ 9971235 (-) False LOC120544999
XM_039780816.1 mRNA upstream 17957 9972694 ~ 9984025 (-) True gtf3c5
XM_039778853.1 mRNA upstream 38861 9993598 ~ 9999567 (-) True gfi1b
TU235686 other downstream 75815 9861001 ~ 9874345 (-) False grin1a
TU235701 other downstream 106661 9842812 ~ 9843499 (-) True G174120
TU235399 other downstream 878952 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 1316261 8625482 ~ 8633899 (-) False LOC120545754
TU235162 other downstream 1592133 8357723 ~ 8358027 (-) True G173727
TU235744 other upstream 142639 10097376 ~ 10108283 (-) False gtf3c4
TU235941 other upstream 1206503 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 2402191 12356928 ~ 12357890 (-) True G174439
TU236126 other upstream 2435818 12390555 ~ 12391484 (-) True G174442
TU236617 other upstream 4525725 14480462 ~ 14483417 (-) True G174799

Expression Profile