RNA id: XM_039778931.1


Basic Information

Item Value
RNA id XM_039778931.1
length 2400
RNA type mRNA
GC content 0.49
exon number 19
gene id LOC120545005
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18772640 ~ 18834666 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAGCTGTGCCGCAACCACAAGcgcaacagaagaagaagaaagaactTCCGGAGGTCATAGGTGATCTTCGTTTTTGAAAACATGGATCCAAACAACGTGAATGAAGCATCGGACAAGATGAGTGATGATGGAGAAATGGCATCTGTAATGGGATTCTCTGGGTTTGGTAAGAAGGCCCGCACATTTGACCTGGATGCCATTTTTGAACAGACCCGTCGAACAGCCATTGAGAGGAGTCAGCGTGCATTAGAGAGGAAGCAGAATGATGATCAGATGGCGGAGGAAGGGGAAAGCTCCAAATCAGTCAAGTCATCAGTACACACTCAGAGAGACAAAGCTGCGACTGCTACTTCCAGaaAACAGGAGAGTGAGAGCAGCAGTGACAGTGGTTCGGATTCAGACTCAGAATCAGAGCTTATTGGGCCTCCACTGCCTCCTCAATATACAGCCCAAGATGACGATgatgagcatgtgcgactgcctCGCCTACCAGGCAACGCGGCTCAcagtgatgaagatgatgatgaagggGAGACAcaagatgacgatgatgatgatgatgatgacAATCCAGTGAAGAAGATTCCAGACACTCATGAGATTACACTGCAGCACGGCACCAAGACAGTATCAGCTCTTGCCTTAGACCCCTCTGGAGCTCGTCTGGTGACTGGTGGGTATGATTATGATGTGCGGTTCTGGGATTTTGCTGGAATggaccaggctctgcaggcttTCAGATCCCTCCAGCCCTGTGAGTGCCATCAGATCAAGTCCCTGCAGTACAGCAACACTGGTGATGTCATTTTGGTGGTTTCTGGCAATGCGCAGGCCAAGGTGTTGGACCGTGATGGCTTCAATGTCATGGAGTGTGTGAAGGGAGACCAGTACATTGTGGATATGGCCAAAACCAAGGGCCACACAGCTATGCTGAATTCTGGCTGCTGGCATCCCAAGATTAAAGAAGAGTTCATGACCTGCTCCAATGATGGCACTGTGCGCACATGGGACCTGAGCTCGGAGAAGAAGCACAAGTCTGTGTTCAAACCGCGTTCCTTCCAGGGGAAGAAGGTCATCCCCACATGCTGCACCTACAGCCGCGATGGGAAGCTCATTGCGGCAGGCTGCCAGGATGGCACCATCCAGATATGGGACAGAAACCTCAGCGTCCATACAAAGTTCCACTGTCGGCAAGCACACATTCCAGGATCAGACACCTCTTGCCTCTCCTTTTCGTATGATGGCATGACTCTCGCTTCACGTGGAGGTGATGACACTCTGAAGATGTGGGATATACGTAACTTCAGGAATCCTGTGAATGTCGCTACTGGACTGACCAACTACTTTACAATGACTGACTGCTGTTTTAGCCCAGATGACAAACTTCTTGTAACGGGGACCTCTGTGAAGAAAGACGAGGGGAATGGGAAGCTGGCTTTCTTTGAGCGAGCTTCCTTTCAGAAGGTCTATGAAATAGAAGTCACCAATGCAAGCGTCGTACGCTGCCTGTGGCACCCAAAACTTAACCAGATAATGGTGGGAACTGGGAATGGACTGTCCAAGGTCTACTATGACCCTGTTAAAAGCCACAGAGGTGCTAAGCTGTGCGTAGTGAAGAGTCAGCGGAAAGAGAGACAAGCAGAGACGCTTACACAAGATTACATCATCACACCTCATGCCTTACCCATGTTCAGAGAGGCCCGGCAGCGGAGTACACGAAAACAGCTGGAGAAGGACCGACTTGACCCAAAGAAATCCCACAAACCTGAGCCGCCTGTGTCTGGACCAGGTCGTGGAGGAAGAGTAGCAGCTCATGGTGGCACTCTGTCTTCATTCATTGTGAAGAACATTGCTTTAGATAAAACCGATGACAGTAACCCACGGCAAGCCATCCTACGTCACGCCAAGGAAGCTTCAGAAAATCCTTACTGGGTTGCTCCGGCATACACACAGACCCAGCCAGAGCCTGTGTTTGCAGAGGAAtcagaggaggatgaggaagcTGACAAGGAACCAGAGTGGAAGAAACGCAAGATCTGAGGTGCCTCAACTGCAGCTCATCTATATGGAATAGCAGACAGGGTGTTGCAGCGGTCCATCACATCAGCAGTCATAAGTCTCTCTGCCCTCGTGCCCTCACTGAAGCATCACAAGAGTTCAGGGTGAGTGGACAACTCAGCTACACTATAACCACTCAACATATTTTTACAAACcaacagaaaaaagaaattgttgGTTCAACAGTAATATTCAAATTGCAATGATTCCAtgccagtgcatgctgggatagcCTCCAGGCTCCCATTTACCCTGAACAGGAATAAGCAGGtaaaaagaatgaatgaaaggaaatcatacTTATATAAACAAGTTTAAAAGCACGAATGTAATATGAACT

Function

GO: NA

KEGG:

id description
K24752 WDR70; WD repeat-containing protein 70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238139 lncRNA upstream 85912 18676044 ~ 18686728 (+) False srsf9
TU238127 lncRNA upstream 98675 18670383 ~ 18673965 (+) True G175925
TU238118 lncRNA upstream 114356 18657690 ~ 18658284 (+) True G175917
TU238116 lncRNA upstream 115023 18656524 ~ 18657617 (+) False LOC120545610
TU238221 lncRNA downstream 1509 18836175 ~ 18836754 (+) True G175974
TU238220 lncRNA downstream 16412 18851078 ~ 18854548 (+) True G175973
TU238449 lncRNA downstream 564504 19399170 ~ 19402367 (+) False LOC120545529
TU238472 lncRNA downstream 653644 19488310 ~ 19492082 (+) True G176173
TU238477 lncRNA downstream 661370 19496036 ~ 19502184 (+) True G176177
XM_039778926.1 mRNA upstream 443 18752044 ~ 18772197 (+) True cplane1
XM_039778929.1 mRNA upstream 443 18752044 ~ 18772197 (+) False cplane1
XM_039778927.1 mRNA upstream 443 18752044 ~ 18772197 (+) False cplane1
XM_039778928.1 mRNA upstream 443 18752044 ~ 18772197 (+) False cplane1
XM_039780031.1 mRNA upstream 46256 18723885 ~ 18726384 (+) True LOC120545567
XM_039778932.1 mRNA downstream 24602 18859268 ~ 18864887 (+) True opn4xa
XM_039778933.1 mRNA downstream 24602 18859268 ~ 18864887 (+) False opn4xa
XM_039778934.1 mRNA downstream 24602 18859268 ~ 18864887 (+) False opn4xa
XM_039780058.1 mRNA downstream 33687 18868353 ~ 18905862 (+) True pdlim5b
XM_039780059.1 mRNA downstream 33687 18868353 ~ 18905862 (+) False pdlim5b
TU238143 other upstream 48855 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 85912 18676044 ~ 18686728 (+) False srsf9
TU238154 other upstream 85912 18676044 ~ 18686728 (+) False srsf9
XR_005636603.1 other upstream 224499 18536631 ~ 18548141 (+) True myo1hb
TU237773 other upstream 695138 18076239 ~ 18077502 (+) False LOC120545364
TU238450 other downstream 545611 19380277 ~ 19387442 (+) False LOC120545529
unassigned_transcript_963 other downstream 682569 19517235 ~ 19517306 (+) True trnac-gca_32
TU238926 other downstream 2112018 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 3444214 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 3661747 22496413 ~ 22524368 (+) True LOC120545252

Expression Profile