RNA id: XM_039778941.1


Basic Information

Item Value
RNA id XM_039778941.1
length 9452
RNA type mRNA
GC content 0.50
exon number 31
gene id prrc2b
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 21613897 ~ 21647241 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCGATCAAGCCTACACAGGCCGGGTAGGACCCCAGCAACAACGCTGCGATCGGTTCAACCTATGAAGATTGGGCTTTTCAATCGCCATCCATCCTTTGAATAGACaacattttgtggaaatatatcACTGTCACTGATCAGAAGATACACTAAGTCGTTCAACCGAATCAGAAGGCACTGGGAAGAGGCGCAAAGAAAAATTTCCATACTCGATGACATTACATCGCAATGTCCGATCGTTTGGGGCAAATAACCAAGTCCAAGGATGGGAAAAGCAAGTATTCCTCACTCAGCCTATTTGACAAGTACAAGGGAAAATCAATAGAAACTCAGAAAAACGCAGTAGTTCCGCGACATGGCTTGCAGAGTCTTGGCAAAGTGGCCGCAGCACGGCGCATGCCCCCACCTGCTCACCTGCCGAGCTTGAAGTCTGAAAACAAAGGAAACGATCCCAACGTGATTATTGTGCCGAAAGACGGTACAGGATGGGCGAACAAGCAGGAACAACCCGATCAAAAGAGTTCTATTGCATCAATACCACAGCTGCCGGAGTTGCAGCCGCAGCTGGCTTTACAGAAATCTGTCTCCAATCTTCAGAAGCCCTCACCGGTAGCCAACCAggagaacacaaacacaggtGGACCAAAGCAATGGGCCCAGCTAAATGGAAAGGCAGTAGAGCAAGATGGTTCAAGGGCCTCAAACCGACTTCAGCCCTTCTCTCACGAGGAATTTCCCACACTGAAGGCAGCTGGAGAACAGGACAGGGCTGGCAGGGAAAGAAGCGGCTTCGATCCGTCGTATGGGCCCGGACCAAGCCTCCGCCCCCAGAATGTGACGAGCTGGAGGGAAGGTGGTGGCAGGAACCTTCAACCCTCAGCCCTGACCCTTGGCCTGCCGGCAGATCCTGAGGGTAAGCTCACTGCCCTGGGTGAGACTGGCTCCCCTCCAGCCTTATCCCACCCCCCTTCTGCCACCGGCACAACCTCTTCTAGTGTAGTGACTGCTCAGTCACCAGTCCTTGACCCCAAGGAGCCTTCCCTGCGACCTGCCCAGCCAGTCCGCAGAACAACCGTCCCCACTGCCCTGCAGTACCAGCTTCACCACACTTCAACTGCTGTCTACCATGACATGTTGCCTGCATTTATGTGCTCTAAAGAGACACGTGAAGCCCCAGGTACAGACCATGTTCCGACCACCGTAGCTGCCCCAGCCCGATTTGACAGCAAACCCACTTTTAGACAGAACTACGCCAAACCTGAACTTGTTAATGGTGATGTGAGAAGAGAGAACCGCTTTGTCCGTGCTACACCTCGACCCTCGTCTCAGCCCATCCGCAGGCCTGGTGACAGACCGCAACGCCCAGCCATCATTAATCCAGAGGACTTGAAGGATCTGGATGAGCTTGACAATGACTGCGAGGATGGATGGGCTGgaCTCCATGAGGAAGTTGATTATAGTGAGAAGCTTAAGTTCAGTGATGACGAAGAAGACCACCACCACGGTGAAAAAAACAGGATGTGGGCTGAATGGGAGAGGGAGAACCAGCGTGACTGCCAATCCTCCCTAAATTCAGGTGAGGTGTCTTACACCCAGGAGGGCCCTGAGGAGAGCTATTCCTACCAACATCACCACCACGAGCCTCCCCGGAAGACCAACGGCAGATATCTCTCTACAGACACCCCGACCCAGCAGAAAAACCAAGGTGAGCCACTGGCTGACCAGGAAGATCACCAGCGCCAGTCTCAGGCTCCAGCTAGGGCGAAGTATGTGTCCCCTGAGTTGTCAGAGGCTGTTGAGAGGGCCCGCAGACGccgggaggaggaagagaggcgtGCCCGTGAGGAACGGCTGGCTGCCTGTGCTGAAAAACTCAAAAAGCTGGATGAAAAGTTTGGGAAGACTGAAAGGCAGACATCAAGGACAGAGGAGGGccagaaagagggagagggcaAAGAAGTTCCACTTTCCCCAGACGGGGAACAGAGTAAAGGCCTCCATGAGAACTGGCAGTACAGCACGAAAGATGTAACGGAGTGTCCCCCAGACAACTCTCCTGGCCATAGTTACCGTGAGGAACCTGCTTTCTCTAACTACCGTGCCAGTGATGACGATGTCCAGGAGCCCTCCTCCCCCTCAGGAGACTACAGTGGACGTCATCCCTCCAAACCCATCCCACCCCGCTTTCAAAAGCAGCCCCAGcaccatcagcagcagcagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcaacagcagcagGAACAAGTATACAAGATGCAGCACTGGCAGCAGTCAGGTCACCCTGCCCCATCTGGGTCCAGCCATGGCCAGCGAGGCTACTACCCCCCACACGTCCTCGGGTTTGATCCCCGCTGGATGATGATGCCACCTTTCATGGATCCCCGCATGACCCAAGGACGATCTCCTGTGGACTACTACCCTGcaggAATGATGAAACCCATGATCCACCAAGACCACCTGAACAGCCCTGGTTCCGATGAGGGATGCCATCCTAACCTGCACCAAGAGAGAAGAGCCCCTTCCACTGAGCCTTACCCTATGTGGAACCAAGATGGTTACCCCTTACGCAGCTTCACTCCACCTTACCAGAGGCAGCATGAAAGCTCAGATAGTGGCCAGCCAGATGACAGaAGTGATATGGCCTGCCCCCAACAGGACTCCTATGAAGAGAGGGCCAGTGAGTGCTTGACCCACCCCCAAGATGATATCCCCCATCATGCTTACCAGAGCCGAGGCCCAGACAGAGAACACCAACACCATGACCAAGGCTTGCTGACCACTGCTCAGAACCACTCCATGAATCATGCGGATAGTGATTACCCAAAACAAGACTCTAGAGACAAGCATCTGAAAGATGGCTCTGAATCACACGATGAGACCTTAGATGGCTCCAAGGACAATTGGAAGAGAGATGGAGGCCAGAAACAAGACGGAGGCCTCAACAATGCTCAAAGCCAGTGGTCCGAACCCAGTTCCAGTAGTAGTGTTAGCCAGCCATCTGAGACCAGTGGGCGCACCTTGACTCGCAGAACTGGGCCCATCAAGAAACCAGTACTCAAGGCTCTCAAAGTGGAAGACAAGGAGAATGAGAAGCCTAAACCTGAGCCTGAGGAGAAGCCTGTCCCTTATCGCCTGGAGAAAGAAGTCCTTACTAATGTTTACGACTTGAAGAAAGATAACCAGCCTGCCAGCAACAGGCATGCAGCCTCACCTGTTATTGAGAAACACCCCGAAGAGAGGCAGCGTCAGTCACCAGCTCCCACCAAAACAGAGAGGCCTCTGAGCACCCACAGCGACGACTCTCCCAAGGAGAGCACCTGGGACAGTGGCAAGAGCCAGTCACCTAGAGATAGCCAGGAAAATCGGGAGCCCCAGGCACCTCGGCGTAATAACTGGATCTTCATCGATGAAGAACAGGCCTTTGGTGCTGTCAGGGGAACGGGTAGAGGCCGCAGTCGAGGCTTTAGGGAATTTAGCTCAAGAGGTGGAACCCGTGGTGGCCGAGGTGGAGACAATCTCAGAGGGGCttataacaacaataacaacagcgGCGCTCAGCGGACAGGCAGGGGCAGAGCACCACCAAGGGACCTTGTCAAGGTGGAGGAGTTCCAGAGAGGCAAGCCCCGCAGGCGAAATGTCAGTGAGACCTTGAGTGAAGCCTCGGAGTATGAGGAACTGCCCAAGAGGCGCCGTCAGAAGGGATCTGAAAATGGAGAAGGTTACACAGAGTCTGGAGAAGTCCGTAAGGCTGATAAAGACTCTTGGAGATCCAACAAGGTTTACACAGATGACCAGACGGCCCCAGATTCCAGAGAAAAGGCCAAGGCCAGCAGGGGCTTTGGAGGTCGCATGCTGCCTCCCAGACTGAACACCACTGGAAGTTACAGTCGAGGCTTTGGAGGATCCAGGGACATTTCTACATGGAGGGGCCGTGGGCCCCAACTTAGTAGCACTGGTGGCTCCATGCAAGAAAATGGTTATGGTCCTGGAGCTGAGAGTACTTACTCCCGCAGACCACCTGTTGAACGGGAGACTCTCAAGTACCCCCCTAAATTCACTGGCTCCTTCATGGAAAATGGCACAGAGGACCGTGAAGGAGAATTCTACTTTGACAATGACAACCCTGATAGGCAGATGTTAAGGAGACGGCGTCCACCCCGTCAAGACAAGCCTCCCCGCTTTCGTCGTCTACAACAAGAACGTGAACCTGGCACAAACCAGTGGACAAGTGATGAGTACATAAATGGAGAGTTTGCAAACCCATGGCCTGGTCGCCCCAAAGGCAGTGGGGAAGACAACTGGCCCAGTGGCCACTACTCTGGTGCACGCTCTAACCAGCATGGTCAGGCAGAGGAATGGGAGACGGGATCAGAGAACAGCGACTTTGGTGACTGGAGAGAGAAGCGAGGTGGAAGTGGAGGGGCAGCTCCACAAGGACATGGTGATATTCCTTCAGAGTCTTGCCATAGTGAACCAGGCTCAGGCGAGAAGAGGGAACTTTGCAAGAGAAGCTTCTCCAGCCAGAGACCATTGGTGGAACGGCAGAATAGAAAAGGGGAGCCATCACTGCTGGAAGCGAACAAGATGAGACGTTCACCTGATAACCCCCCTACCTCCTCCAACAGGAGTGACAGTTGGCAGAATGGAGTGACTTCTTGTAAGAGCAGGAGCCCAGATGAGTCGGGCCCAGTCTACAGCATAGAGCAGCCGGAGGAGAGGGAGCCCAGTGAGCCCTCAGGGAAGAAATTAGACAAGGACATCAAGCAAGGACCTGTCAAGACAGACATAGCCGAACCTCTGTCCCAGTATGAGCTCAGCAGCTACCCAATTGAGGGGGACACAGGGGGACCAGTTTCTAATCCAGATGGATACCAGGATGCCCTGTCAAAAAAGCAAAGACGCCCACAGGAAGATGATAGAAGGAGGAAGGAACAGGGAGCTCCAGTGCCAGTGAAAAACAGGACTATCACATCCAAGATACCGCCACGCTTTGCCAAAAAGCAGGGAAGCTTGGGCATTGAACAACCTGAGGAAGCACTTTCTTCCAACAACTTGGGAACTGAAATCTGGGAGACAAACAGCTCAGCTCTTTCAGTACAGTCTTCAGGGGGAGACTCATGGACTAAACAGGTGTCTTACACTGGGAGCGAGCCCAACTCTGAGGACTCTGATGCTGGCCCAGAGCAGAATAAAGAACAGCACAAGCCAGGGCCCATCGGAAATGAACGCTCCCTAAAGCACCGTAAGGGATCGGAAGCTGTTGATCGGCTGGAAGGTGGCCCAATTACGCCAGTCAATGGTGTGGACCTCCATGTGGACACTGTGCTGCCTGTGCCTCCTATTGAGTTTGGTGTCAGTGCCAAAGACTCTGATTTCAGCCTACCACCGGGCTCTACCCCAGTGCCCGTGTCCAATTCTGTCAACAAGCTTCAGGAGGCTCTTACCACCAATaCGGCTCTCAATCAGAGTATCCCCATGCTGCGTTCcaaccacctacagcctggtaTTAACCTCAACCCCATCTCCTTTCCCAGTGCTGACCTCACTCTCAAGaTGGAATCAGCACGCAAGGCGTGGGAGAACTCCCAGTCCCTCCCTGAGCAGGGCTCTCCTGGTGGAGGTGCTTCAGGTGCTCAGCCTCCCTGCAGTGTTGGCTCATCCAGTGGTGTTAGCTACAGTTCCTTTGGAGGGGTTTCAATGCCTCCGATGCCTGTGGCATCAGTAGCACCTTCCATGTCCATGCAAGGTAATCATATTCCCCCATTGTATCTGGATGGTCATGTTTTTCCTAGCCAGCCCCGCCTTGTACCTCCCATGACCCAGCAGCAGACCTACCAACAGGCGGCCGCAGCACAGCAGATTCCGATCTCTTTGCACACGTCTCTTCAGGCTCAGGCTCAGTTGGGGCTTCGGGGAGGTCTACCTGTCTCTCAGTCCCAAGAGATGTTCAACTCTATTCCTCCCTTCAGGTCCCAGGTTTACATGCACCCCAACCTGTCACAGCCCAACCCCATGGTGCTGTCAGGCGGAGCCCCTCTCAAAGGGCCTTACTCTGCTTTCCCTGGTATGCAGCCCTCAGACATGGTCAAGACACAGTCAGGCTCACACTATCAGCCTATGAATGGCAGCCAGCAGCTAGTCTATGACAGCCAGATGAACCAAGGGCCTGGTATGGGTTCCTCCCAGCTAATGGACTCTCAGCTCATCCAGGTGACCATGCCCCTACCTGGCTCTCAGCTCCGCTATGGTTCAGCTCAGCAACATCTCATCCTCCCACAGTCCATCCAGCTGCAGCAGGGACAAAACCTGTCAGTCGGGGGCCCACGCCGAATGCTGCCACCTGGCTCCCAGGCTTCGGTCATGACTGGCAGCCGAGAGGGCTCACAGATGGAAATGAAAGGCTTTCAGTTCTCTGAGAAGAATCATTCCCCAGGTATATCTGGGGGGTCCTACAGGCCTGGGTCTGCCAGCCCCAGTGGGAAACCCTCTGGTCCTGGGGGTCCTCTGCCTACACATTTTGCTCAACagGTCCCAACTTGCCAGGGCAGCATGGTGATGCACATGCGGCCCCCCACCACTGGCCCTTTCCCCAACCCCATCCAGAGACCAGTCATGCAGGTCAACAAGCCTGTCATCATTCGCCCCCCCCCTTACCCCAATCCTGGCCGCGACCTTTCCCACTCCACCCCTCCCTCGGCCCCTGAGCCCCATGTTAAAGGGCCAGAGGATGGCATGAAGAATAAAACCATGCGAGAAGTGCGACAGGCAGTGGGTGAGGGCAAGACACCATCTGGGGGCATGACCAGCAAACTCCAGGAGCCCCTACCCTCCACAGGGCAAGCCAAACCAGCACGCACTGGAGCCATCAAACCCCAGGCTGTCAAAGTAGAGGAGGGCAAGGCATAACAATGGACCTTAAATCCTCATCATCACTTAGCCTGCCAACACAAGCCCCTTGACCAATGTCTGAGCCTTCCAAGACCCATGTTATCCAAAGGCACCATGGCAAGGGGCAGACATCATAATGAATTACCCCTCTTGAACTGTCAGAACTGGACACCATTTCACACCACGTATAgagatatataaatatatataaatatatacatagacACAGTCTTTTAAGCAGATCTCTTCAAGGTCctctttaatttattattagtcACTTTTAAGGGGAGATTGGTAAAGAGAAaagatatttctgttttttttttgtttctcttcaaGGTGGGGAAAATAAAAATGGCCATCTCAGACAGATGGTTCATTTTTCATACCATTTTGCCAAACTGTATTTACTCCCTCTTATGGACTGTTGCCGTTAATATCAGGCAGACACTTGATATAACTCACTATTAGGAAgcaaagtaatttttttaaacaaatttgaAATGCAGTggggcacttttttttttttttaatcatttttcatTGGCATTTTCGCTGGTAAATTTAATGTTTAAGTCATCACCCATTCCTGCTATTGGTAGGACTTACTTTATTAACCCAGAAAAAAATCCACCAATTTGTGGACATCATTGCATGTCAAGATGTCAAAAGTCAAGTAATGCATCTTCTGGGGTACTTCACCCAGCCTATGAACTGTGGCAAACTGCTTAGTTTGGTAGAAATCATTTCTTTTCTTAATACTCTGTTCTTTGCTTTTACATCCTGTCGCTCGCTCTCTTCCGTATGTAAATTGAAACTAAAAGGTGGACATTTTACCAAAATCATGTTTCTTCCATGGGAACTTCACTGGTATTGATACAGCGTGTGCATGTGATGTGCTGAATGTGTGTAAACTTGCGGGACTCCTACTTAGAACAGAGCAACATTTCACAAAGACTGTACCTGAACTCAGCATTCATAGTGCTGCCATCGACTTGTGTGGATTTTGATCAACCAAGCTGGCAACAATTTTTTGGGCTCATTGtaaagtttttttgtgtgtgtgggggggctgCATTCACAATTGCTATAAGGACCCCCCCAAAATAGCTGATTGAAATGTTTGCTTTCTTATCGCTTTGTTTGGGTTGTAATTCATCAAGTTGTCGGTTAATGAACATGTGATGTAAGTGATGATTTTTACATCCCTAAGTCTGGGGCGTTAAGCTTTCTTCTTTAAAGGCTCTTGAAAGACTTTCCTCTCTAATTCCGGTAAAATCCCACTTAACAGTACTGTGGGGGACTTGCGAAGAAACAGACTCATCACCATTTGATTATTCAGCATCTGGTCTCTGAGGTGGCACTAGCAATAAATGCAGCCTAACTATAATCACAATCAGGGTCCAACAAGAAGCTAATGATCACAAACGAGGGGCATATAGCATTGCTTGTTGAATAAAATACGTTATTTGCTTAAGCTTTTTTTGTGAGCACTGCAGTTCCAGTGGACTACGAAGGACTTTTAAAAGTGTTTGTTCTATTTGAAAATGTGAAGCTGTTGGAATCatcttttattctgtttttttgtaatggacATTCTATTGAAACTCACAATACCTATGTCCTAACTGGTTAAATGTTACTGCTTACCATAACGCTCCATGACACTACAAAATGTTAAGATTTATCTTTGACAGTGTTTCActggtatatatgtatatgcatacTTAACTGTACAGTCGAGCCTTGTCAGCAAGGGGAGGCTTAAACCCACATTTCATTTTAGATATTGTGGCACTATAAAGGATTTAACGTTGGAAAGGTCACTGTGTTCTCAGAATGGACTGCTTTCACTTGTTGATAGGTTTAGtgggcttgttttttttttgcctcatccCTTACTGCAAAAGATCATGATGCTTCTCATCATTGTACCTGCACCAAAATGTTGCcctgagttgtttttttttgtacttttaagaTGCATATTTCATTTTGTCAAAGGACCAGTGCTTTCTACAGCTGATCCGGCATTCTATTTATCCTACCTGATCTTTATCCTTTCAGATATTTGGTCATTACTCTcccttgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaagagcttattgaaagaaaagaaataaagcaGTTGTGTTTTCTTAAATGTACTGTTGATTCTGTATTCTCACTTTGTTGTATTAAAATCATGCATCAAATTCTTGTGAAAGCAGAAATGATGGGGAAATGAATTTAGGCTATGTGTCCAGCACAATATCAGATAAACACTGACTGTTCTGTGGTGTTTTTAGCTTTTCACACAGCATTTCCTCCAGGTACCTGAGCATATTTTCTCCCAGTAGCTACACCTTATATGTACCCCATTCTCAATCAAGCATTTCCACTTTAAAATAAGTTGTACCAAAAACATTTGGTTTGGATGGACCGTTTTTGCCATGCATGGTTATGCCATAAAACCATACAACTACAATACACTGTGTGTTCCATTCACACAAAGGTT

Function

GO:

id name namespace
GO:1990234 transferase complex cellular_component

KEGG:

id description
ko04139 Mitophagy - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238978 lncRNA upstream 203438 21401914 ~ 21410459 (+) True G176565
TU238962 lncRNA upstream 214894 21397647 ~ 21399003 (+) True G176559
TU238944 lncRNA upstream 459042 21151267 ~ 21154855 (+) True G176542
TU238899 lncRNA upstream 676605 20936806 ~ 20937292 (+) True G176507
TU238872 lncRNA upstream 996179 20616036 ~ 20617718 (+) False pappaa
TU239103 lncRNA downstream 7962 21655203 ~ 21655587 (+) True G176644
TU239168 lncRNA downstream 316855 21964096 ~ 21964825 (+) True G176696
TU239176 lncRNA downstream 323907 21971148 ~ 21971498 (+) True G176702
TU239177 lncRNA downstream 324397 21971638 ~ 21971985 (+) True G176703
TU239178 lncRNA downstream 324868 21972109 ~ 21972443 (+) True G176704
XM_039780603.1 mRNA upstream 3059 21601342 ~ 21610838 (+) False LOC120545922
XM_039780602.1 mRNA upstream 3059 21601344 ~ 21610838 (+) True LOC120545922
XM_039780597.1 mRNA upstream 29325 21546834 ~ 21584572 (+) False nup214
XM_039780601.1 mRNA upstream 35134 21546834 ~ 21578763 (+) False nup214
XM_039780595.1 mRNA upstream 35136 21546834 ~ 21578761 (+) True nup214
XM_039778946.1 mRNA downstream 4614 21651855 ~ 21655151 (+) True edf1
XM_039780492.1 mRNA downstream 82430 21729671 ~ 21742031 (+) True tmem38b
XM_039780493.1 mRNA downstream 82757 21729998 ~ 21742031 (+) False tmem38b
XM_039779108.1 mRNA downstream 148396 21795637 ~ 21840744 (+) False znf462
XM_039779105.1 mRNA downstream 148396 21795637 ~ 21840744 (+) False znf462
TU238926 other upstream 666842 20946684 ~ 20947055 (+) True G176526
unassigned_transcript_963 other upstream 2096591 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 2226455 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 2890112 18676044 ~ 18723785 (+) True srsf9
TU239244 other downstream 631639 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 849172 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 884667 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 1359026 23006267 ~ 23008812 (+) False klhl8
TU239701 other downstream 1535432 23182673 ~ 23184262 (+) True G177094

Expression Profile