RNA id: XM_039778995.1


Basic Information

Item Value
RNA id XM_039778995.1
length 2354
RNA type mRNA
GC content 0.54
exon number 11
gene id rxraa
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 11183862 ~ 11417652 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGTTGGTGGGAGTACCCCCTGCACAGGTCCCTTTTGCAGTGCAGCTCCAGTAGTTGGAGTTGCTGTACACCGGAGCACGAGAGGGAGAGGAGCGCGAGCGCAGCAGATGAGTGAGCGAACAGAGGTAGAGACCATTAGGGTTATCTTTTGAGACTATCACACGGCGACCTGTCACTTTTACGCTTCGTGCCGAGTCTACTTGAAGAGAACCGCAGCAggagcagcggcagcagcagcagcagccctggTCCGGTCTGGTCTGCTCGAGCAGCCGCCTGTGAAAAACTCCCAAACGCGGTCGTCTCAGCTGGCATGAGCTAACCTACCAGACAGACATGGAAACCAAACCGTTCCTGTCATTGGGGTTCCTGAAGCCCCAGTGCTCGTTGGCTCCTCCCATGCAGCGAGGCCGCTCGGGCGAGGCTTGTTCCTGTTTCAGCGGCATGTGTCCCCTCCATCAGCGCCGCCTATCCTCAGACTCATCGGGGCACTTGACGTCCTCGCCCCTGGGCTCACCCACATCCCACCGGGGAATGCACCCGTCTCTGCTCAGTCCGACGTCCATGGGGCCCTCTGGCTCTCTTCACTCTCCCATCAGCACGCTGAGTTCGCCCATGAACGGCCTGGCCTCCCCCTTCTCCGTCATCAGCTCGCCCATGGGTCCCCACTCCATGAACTCGCCCGGCATGGGCTACGGCCCCAGCGTCAGCCCCCAGCTGAACTCTCCGATGAACTCGGTCAGCAGCACGGAGGACATTAAGCCCCCGCTGGGCCTCAACGGCGTGATGAAGGTGCCCGCCCAGCCCTCAGGCACCATCCTGTCGCTCACCAAACACATCTGCGCCATCTGTGGTGACCGCTCCTCAGGTAAACACTATGGAGTATACAGCTGTGAGGGCTGCAAAGGTTTTTTCAAAAGGACAGTCCGCAAAGACCTGAGCTACACCTGTCGCGACAACAAGGACTGTGTCATTGACAAGCGCCAGAGGAATCGCTGCCAGTACTGCCGCTACCAGAAGTGTTTAGCCATGGGCATGAAGAGAGAAGCCGTTCAGGAGGAGCGCCAGCGAGCCAAGGAGAGGAATGAGAACGAGGTGGAGTCCACCAGCTGCGCCAACGAGGACATGCCCGTGGAGAAGATTCTGGAGGCGGAGCAGGCGGTGGAACCCAAAACCGAGACGTACATAGAGACCAACCTCGGGGTGCCATCCAACTCGCCCAACGACCCAGTGACAAATATCTGTCAGGCAGCTGACAAACAGCTCTTTACTTTGGTGGAGTGGGCCAAGAGGATCCCCCACTTTTCTGAGCTGCCACTGGACGACCAGGTCATCCTTCTACGAGCAGGTTGGAATGAACTTCTCATTGCATCATTTTCGCACCGTTCGATAACGATTAAAGACGGGATCCTGTTGGCGACCGGGCTGCACGTCCACCGCAACAGCGCCCATAGTGCTGGAGTGGGAGCCATCTTTGACAGAGTGCTCACAGAACTGGTGTCAAAGATGAGGGACATGCAGATGGATAAGACAGAACTGGGGTGCCTTCGAGCGATAGTCCTATTCAACCCAGACTCTAAAGGTCTGTCCAATCCAGGTGAGGTAGAAGCTCTGAGAGAAAAAGTGTACGCGTCTTTAGAGGCCTACTGCAAACAGAAGTACCCCGACCAGCCTGGCAGATTTGCCAAACTGTTGCTGCGGTTACCAGCGCTGCGCTCCATCGGCCTCAAGTGTCTGGAGCACTTGTTCTTCTTCAAGCTCATCGGCGACACGCCCATCGACACCTTCCTCATGGAGATGCTAGAAGCCCCCCATCAAATGACATAATAGCAGAGCTAACATCTCCCACCAGCCCTGGATCAGGAACGGAGTcctttttaagaaaaacaaaaaaaaacaaaaaaaacttctgtCTCCAGCTAAGGGACAGATGATGTGACGACTTTGGATGGAGAACTTCTCCCTTCCTCCTGTCCCTCCCTCTAGCCCTTCTCCCTTTTGATGTGTTTCCAAACAATGAATTCATCATGCCTATGGGTCTGTTTAATACCTtgtaaaaaattatataaataaggaatatatatataaatatatatagatgAAAATCACACGGCAACACAAGTGACAACCGTGGACTTAAAATAAGTTTGGACAGAAGACGAAAGAAACGTATTGAGCCATCGTTTTCATCCTTGCTTTTTTCCCTGCACCTTGACAAGAAAAAGCAGAGCTGGTCGGGTCTGAAACGCCCTCAGCTTTGCTTgcaggtatttaaaaaaaaacaaaaaacggcggTGATGTCATATTTGGACATTCAGCGTTGTGATCAGGACAATCGTGGACTGGGAGAGcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235937 lncRNA downstream 4353 11177513 ~ 11179509 (-) True G174309
TU235856 lncRNA downstream 635891 10516654 ~ 10547971 (-) True G174246
TU235854 lncRNA downstream 670226 10510586 ~ 10513636 (-) True G174245
TU235837 lncRNA downstream 679286 10502977 ~ 10504576 (-) True G174233
TU235814 lncRNA downstream 804234 10378956 ~ 10379628 (-) False adra1ab
TU235959 lncRNA upstream 312146 11621447 ~ 11621660 (-) True G174324
TU235960 lncRNA upstream 350135 11659436 ~ 11659824 (-) True G174325
TU235962 lncRNA upstream 351224 11660525 ~ 11660862 (-) True G174327
TU235970 lncRNA upstream 436770 11746071 ~ 11746420 (-) True G174335
TU235976 lncRNA upstream 456929 11766230 ~ 11766460 (-) True G174341
XM_039778984.1 mRNA downstream 19368 11153767 ~ 11164494 (-) False LOC120545042
XM_039778985.1 mRNA downstream 19368 11153767 ~ 11164494 (-) False LOC120545042
XM_039778987.1 mRNA downstream 19578 11153767 ~ 11164284 (-) False LOC120545042
XM_039778986.1 mRNA downstream 19579 11153767 ~ 11164283 (-) False LOC120545042
XM_039778983.1 mRNA downstream 19579 11153767 ~ 11164283 (-) True LOC120545042
XM_039778915.1 mRNA upstream 743334 12052635 ~ 12053579 (-) True LOC120544994
XM_039778916.1 mRNA upstream 745383 12054684 ~ 12056612 (-) True LOC120544995
XM_039779877.1 mRNA upstream 748430 12057731 ~ 12068419 (-) False prkab1a
XM_039779878.1 mRNA upstream 748430 12057731 ~ 12068419 (-) True prkab1a
XM_039779879.1 mRNA upstream 768277 12077578 ~ 12114065 (-) True phf24
TU235941 other downstream 19507 11161240 ~ 11164355 (-) False LOC120545042
TU235744 other downstream 1075579 10097376 ~ 10108283 (-) False gtf3c4
TU235686 other downstream 1309517 9861001 ~ 9874345 (-) False grin1a
TU235701 other downstream 1340363 9842812 ~ 9843499 (-) True G174120
TU235399 other downstream 2112654 9070162 ~ 9071208 (-) True G173900
TU236123 other upstream 1047627 12356928 ~ 12357890 (-) True G174439
TU236126 other upstream 1081254 12390555 ~ 12391484 (-) True G174442
TU236617 other upstream 3171161 14480462 ~ 14483417 (-) True G174799
TU236652 other upstream 3275398 14584699 ~ 14589020 (-) False G174827
TU236653 other upstream 3275398 14584699 ~ 14589020 (-) True G174827

Expression Profile