RNA id: XM_039779003.1


Basic Information

Item Value
RNA id XM_039779003.1
length 4963
RNA type mRNA
GC content 0.48
exon number 14
gene id ctif
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 22168378 ~ 22227884 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAAACCGGACTGAGCGTCACATTCCTGCATTCCTTTTTCCTCAGACGTCGGAGATCTAGCTACCACTAGATAGCTAGCTAATCCTCTTCTCCACTTTTCTTTGTGATAAAACACACCCATGACACGGCGGATTTGATCTCAGGAGGTGATCCCGGGTTCACCAGGAGTCAAAATCTCTCTTCGGCTTTGAGGCCTCAGAACTTCTACCTACACTCCATACATGTTGTCAAGCCGGTCACtttcctccttcccttcccctcctccccttccaacCGTCACAGCACTGGTTGTCATGGAGAATTCTTCAGTTGCGTCTGCATCGTCTGAGGCTGGAAGCACACGCTCACAAGAGATAGAAGAGCTGGAGCGTTTCATCGACAGCTATGTGCTGGAGTACCAGGTGCAGGGGCTTCTGGGAGACAAGGCAGATGGAGACTTGGACTTGGACAACGGTGTCAAGGTGCCACAGTGGACAGATGACTGTAACAATAAGAAAGATGGCAGCTGGACGTCTTCACGGGGGAGAGGCTCAACCAAgccaGACGAGTGGGAACACAGCAGTAATGGCAGTACAGGTTCCCGGCCCAGTTCAGGGTCTAGACCAGGATCTGGCTCACGCTCCGGCAGCAGAGGCAGAAACAACCAGTTCACAGGCCCTGCCaagAATGGGAACATGGGCTCCTTTGACATCCTGGGGACAGACATATGGGCTGCCAACACAATGGACTCACGCGGAGGTGCAGGTTGGGACGTGCAGCCAGAGAAGCTGGACTTCAGCCATTTCCACAGGAAACATTTAAGAGGAACGCCAAAACACCTACCACACATTGACAGAGAGGGGATGAACAAAAACATGTTCGAGGAAGATGACGGCATAGACATGAACGACATAGAGAAGTTTCTACCCCATCTGCGTTCTGTCTTCCCACCCCTTCCTAATGAGGCTGAGATTGCACACACCAAAAAGCTCTTCCGACGCAGGAGGAATGACCGACGGAGACAGCAGCGGCCTGAGGGATGCGGAGGAGGGAAGAACCAACCTCAGTTGATACAACAACAGTCACCACAGCACCAGAGGGATCAAACGCAACAACTGTCTCCAAACCAACCGCAGCAGAATTTAATAGAACTGGGAGATAACAGAAACAGCAGTGCTGGTCGGCCACCTCGCCAGTATCAAGGAGGACATGGGCAGCGCCAAGGAGGACCCCCGCACCACGGATACAGCCAGAACCGCCGTTGGCACCACAATCAGAAAGGTCAGGGGCATGGACAGACAAATGCAGCAGGTGATAGAGTTCCCCCAAGAACAgccaaagacaaagagactgaGAATGTAAAACCGGGTGACGAGCAGATCAGATCACCTCAAGACTGCAACAGTAAGAGTCCCAATGAATCACCCAGACCTGAGTCGACACCCAATACAAATGCTTTCCCACATCTGACAGTTAAAAGAGAATCTCCCCACCCACCAGGAAGTGGAAAGGCAAACGAGGGCCAGTCGGAGCAGCCCAAAATCAGCTTGCTGCAGTCGTCAAAGgagaggctgaggaggagactaAAGGACAAGGAAGAGGCACGTGTGGAGGCGGCAGGCTCCGGATCGCAGAGCATGGATCGGCTGGTGGACCTTCTCAATAGCATGAGGAGCAACAGCAGCGGTGTGGAGCAGCGGCTGGCCTCCTTCATGGAGGAGGCGCAGTGCTCGGCGCGGTCCGAGGAAACCCTGGCTCAGGTGGTCAGCACCATCTACTTCAAGGCCGTGTCGGACCGGAGCTTCGCCGCCACGGCCGCCAAGCTCTGCGACAAGATGGCGCTGTTCATGGTTGAGGGGACCAAGTTCAGATCGCTGCTCCTCAACATGTTGCAGAGGGACTTTGCCTGCCGAGAGGAGCTCCAGCAGTCCGATGTGGAGAGGTGGTTAGGTTTCATCACCttcttgtgtgaggtgtttgGCACCATGAGGAGCAGCTCTGCAGAGCCATTCAGGGTGCTGGTGTGTCCAATCTACACCTGCCTACGAGAGCTGTTGGAGTCCACAGATGTTAAGGAAGATGCAGTCCTTTGCTGTTCCATGGAGCTGCAGAGCATGGGGCGTCTCCTGGAGGAGCAGCTCCCAGAGATGATGACAGAGCTTCTAGCAGCCGTCAGGGACAAGATGCTTAGTCCGGTCGAATCTCAGCTGACCCGCTCTCTCCTCATGGAGGTCATCGAGCTGCATGCACACCGCTGGAGCCCCTTGGAGGCCCTCACCACCCAATACTACAACCGTACCATCCAAAAGCTCACCACCACTGCCTAGGGGCCAGCTCCCTCATGAGGAAAGAAGACAGGCCCCCCTGACGCCCCAAGGAAACATTTTCCAGTGAGCATCAATCTGCTCTTCTAGTTTTACCAAAACACAAGAATTTAATAATAACCTCACTCGCTAATCTAATTAATCTACATGCTTTACGTGGATATTGAACTTAATTGTGCAATTTGCTAATTTCTACCGCAAACACAGCGTACACTATCCACCAAACCGATAGCCCTGAGACATCAAGGCAACACTACATGTGGCGTTGAAACAATGAAAAGCAGATTTGACAGACATTTGAGAAAACAGCAACGTATGTATGGCCAGTAGGGGCGTGCTCGGCTACACAGAGTCCAGGAGCTGGGCCGCTGAGCGATAAAGGAGGGAACAGACGAGAGAGGGGTCACACAGGGGAGAGGAGCAGCCCGCCCGTAGGGAATAGAGAGATCTGTACCCAAAGATGAATggaagagggagggggaggtCAGGGTAGTCCATGTCAGTCTCTTCATTGTGTTCATTTGCCCACCACCCTCCCCTACCCTACTGTCTCTTTCTCCACCCCCTCCTCGGTCTCTCAGTCAGCCCCTGGGGTCTGTGTGGCtgataaaagagagaggaggcgGCAGGGAGTAGACATGGTGCTGTCTGTCTGGGCCGTCTGCCCCGCCGGGCCAGGGACCAGGTCAAAGGGCCTCGCTCCCCAGCTCCCACAGCTCCTCCTCGCCTTTGTCTCCCCCACTCCACACCCCCCAGCTGGAAGCCTTTTTGTGGGGATGAGACAGCGGGCCTGCTGGGCCAGACTGGGCTGAGGATAAGGATCAGGATGGCTAGAGTAGGGTGGCAGATGGCTGCTTGAGCCCATATGAGACGACACACCCCTCTGGCACCCCAGCTCCCTGCTCCCCGAGCTCGGGCCGGCGTCATCAATAGAAGCAGTAGGAATATTGCAGTTAGGGGGGTTGGAGCATTAGAAAAGCATTAAAACAAACACTGCTGTCTGAtaattcttttgtttttgtcctaCAGGGGAAGGTCTCTTTTCCTCTGTTAAGCCGTGCATGTACATGCTTTGTTGTCATCTTTgatatgttattatattatttttttaagcatttagtgtttttattgttgGTTCATTTTGAAGTCTTGTTTTTATGATAAAATGTATGTATGAGGTATTAGTGGTAGGCCTTATTGCACAGGTTTGATTTGTTTTGCACTGTTTtgctttaaaatttaaaaaaaagcaaacgtTTGAATTTGAATCAGTGCTTGTGGATTAATATTAAAAATCTCAATAGTGAGACAAATGGTTGAGCATAGTAAGGGATTTTAGGACGTTTTAATGGACTAGTGGCCTTGTCATTTATCCATCTTTATAAGAGCTCTCTTGTTTCGAGGCCTTCAGGGCCTGTGGCAGCAGAGGGCATGCTGAGGACTAAACAGTTGGACTTATTCACATTCTGTTGCTGGagaaaaaatgcatttgaagAGGAAAATAGTGAtgtgataacaaaaaaaaaagcatggcacacagagaaacagaagtGAAATGCTTCTTAAAGATTTCTCCTACTCAAGCCTATCTTTGCAGTGGACATTTTGCAAGTGTTTAATATAACCTGTGTATTTGAAGATGACAATGACGAAAAGAAGAAATCCTATTGTATGACCTCATTAGCTTCATGTGACCCTTATTCCAGCTAACGTGTGTACTATGATTTTGACGTACCAAGCCAATCATGTACCATTTGTAAATGGGCTCTATATATATAATCTGCATACAATATATTTACAAGTATTTAAAATCATTGGAATATAGGTTGATCACGCAACAGAGATGTTAAACACAGAAAGACTGTGGTTGTGTGGCTAGAGTTTGGCCTTCCCATGCATTTCTATCAGGAAGTAGCTCTTTGTTTGGGagtagtcacacacacaaatacatgcacatatgcacatgcatacacatacttAGTTTCCCATTGAATCTCTGTGggcagttttgtttttatattattttctcTGTCTTGCATCAAGAATTAAAAACCCTGTGTGGTAGAAACCCACTCCAGAAGATTAGTTAGAGGAGAAGGGTGATTTAAAGCTCACAATTGTTTTTGGAGTTGCAGCCTAATCGTCTATTAAGTGTGTGTCTGCTTAAGAAGtggtgttttattgtttttttttctgtcttttgttgTAATTTTGTTTCTAGGTTCctgtttaaattatatttagctCCTTTTATATATACTTTCCCATCTGTTGGGTTTTTAAGACATCTGAAACATTTGTGATACTTAGCTTGCTGTGTAAGTGTGGTATTACCATGTTTTAGTTCAGAAAAATACCCATCAGTGCATTTTCATTATGCAAAGAGCGACTCGCTCTAACAGCAGATGGGGGCAGGTGGAGGCTTCCCCACCTTGCGTGCCCTTAGACCCCTCTGCTCAGGTCACATGACTCACTCGACAATTGAATGAGACACCCCATTAATTAGCATATTCTCATGAATATTGGAAAACAAGGCTCTGGTCAGCAAACTGACAAGCTGTAGATTTGGCAATAGTGGGTCATCTTGTGagctcttgttttgtttttctaagCAACTGAAAAATAAACTAACATGGAAAAAATGATTTGATGGAACAAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239202 lncRNA upstream 110485 22057687 ~ 22057895 (+) True G176723
TU239178 lncRNA upstream 195937 21972109 ~ 21972443 (+) True G176704
TU239177 lncRNA upstream 196395 21971638 ~ 21971985 (+) True G176703
TU239176 lncRNA upstream 196882 21971148 ~ 21971498 (+) True G176702
TU239168 lncRNA upstream 203555 21964096 ~ 21964825 (+) True G176696
TU239242 lncRNA downstream 49810 22277694 ~ 22294584 (+) True G176752
TU239296 lncRNA downstream 147784 22375668 ~ 22376537 (+) True G176797
TU239305 lncRNA downstream 162380 22390264 ~ 22390687 (+) True G176805
TU239310 lncRNA downstream 168217 22396101 ~ 22399573 (+) True G176808
TU239311 lncRNA downstream 171725 22399609 ~ 22400328 (+) True G176809
XM_039778863.1 mRNA upstream 81399 22056040 ~ 22086981 (+) False shc3
XM_039778864.1 mRNA upstream 81399 22056040 ~ 22086981 (+) False shc3
XM_039778862.1 mRNA upstream 81399 22068645 ~ 22086981 (+) True shc3
XM_039778855.1 mRNA upstream 114339 22037261 ~ 22054041 (+) False sema4d
XM_039779265.1 mRNA downstream 141283 22369167 ~ 22372791 (+) True rad1
XM_039779294.1 mRNA downstream 149229 22377113 ~ 22384622 (+) True dnajc21
XM_039779295.1 mRNA downstream 149229 22377113 ~ 22384622 (+) False dnajc21
XM_039779320.1 mRNA downstream 195698 22423582 ~ 22471548 (+) False nedd4l
XM_039779321.1 mRNA downstream 195698 22423582 ~ 22471548 (+) False nedd4l
TU238926 other upstream 1221325 20946684 ~ 20947055 (+) True G176526
unassigned_transcript_963 other upstream 2651074 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 2780938 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 3444595 18676044 ~ 18723785 (+) True srsf9
TU239244 other downstream 50996 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 268529 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 304024 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 778383 23006267 ~ 23008812 (+) False klhl8
TU239701 other downstream 954789 23182673 ~ 23184262 (+) True G177094

Expression Profile