RNA id: XM_039779011.1


Basic Information

Item Value
RNA id XM_039779011.1
length 4288
RNA type mRNA
GC content 0.47
exon number 8
gene id arhgap24
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 22824300 ~ 22892523 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGACACACCGACGCATCGATATTCTCTTCCTCTCGCAATCTCTGAATTAAATCCATTATTTATCAGCCGGTGTGAGGAGGTTGTGACACGGAGGACTTCGCTGACACAGAGCTGTCGAGATAGGTGGCGGTGCAAGACTAATCTAAACGAGAAGCGCTGTCTGAAGTATTTTGGAGCGACGGAGCTTTCCCACCGGTTGAAGAATCGCTCACATGTATGAATGTATGAAGTGAGCTGCACAGTTACCGGCGGATTAGTGCACCGTTTTCGCTTCGTTGGAAATCTGTTGCGCGTCGCAGGTTGAGGAAGCGAAGGATGAAATAACATCGTGGATGTGATTCCTGCGCTTAAGAGggggagacagagagcggATGACAGCCAACCATGAGACCTACCTTCTTATGGCCAGCACCCAGAATGACATGGAGGATTGGGTGAAGACGATCCGCAGGGTCATCTGGGCTCCTTTTGGTGGAGGGATCTTCGGTCAGAAGTTGGAGGAAACTGTGCGGTATGAGCGCCGGTTTGGGAACAAGTTGGCCCCTATGTTGGTAGAGCAGTGTGTGGATTTCATCCGGCAGTGGGGCCTTCGGGAGGAGGGCCTTTTCAGACTCCCAGGACAGGCCAACCTGGTCAAAGAGCTGCAGGATGCCTTCGACTGTGGAGAAAAACCCTCTTTTGATTGTAACACAGACGTGCATACAGTAGCCTCTCTACTGAAGCTGTATCTCAGAGAGCTGCCGGAGCCCGTCGTCCCCTTCCAAAAGTATGATGATTTCCTGGCCTGCGCCAAGCTCCTCAGCAAAGATGATGAAATGGGTATGAAGGAGTTGAGAAAGCTTGTGGAGAATCTACCTCCAGTGAACTACAACCTTCTCAAGTACATCTGCAGATTTCTAGATGAAGTCCAGTCATATTCAGGAGTGAATAAAATGAGCGTCCAAAACTTGGCCACAGTCTTTGGGCCAAATATCTTGAGGCCAAAAGTCGAGGATCCAGTCGCTATTATGGAAGGTACTGTTCTGGTCCAGCAGCTCATGGCCGTTTTGATTGGCCGCCACGACGTGCTCTTCCCTCTGGATGAGGACAGCCCCACGGTCCTCGAGCTCGTCAACAACAACATTGAGCTACAACAGCGACAAGCCACCACAACTACCTCCGCGATCACTACAGTATCTCAGAACGCCgagaacaacaacacacaggtgGTGCGGCAGTGTGTTTGGGAAGCACCCGAGTCTCCGTCGCACCGCCAACACGTGGACAACAGTGGCTCCCCACGATCAGCAAGCCCTCGTAATGGTGTCATAGGACGCTTTGACATCACCCGCAGTCCACCACTGACTGTTAAAAAGAACCCGGCTTTCAGCAAAGGCAGTGGGATTGTTACAAATGGCTCCTTCAGCTCTTCGCCGTCTTCAGACCCCAGTCAAGAAAAGAGCCAGACTTTgactggtggtggtgggagtTTATCGGTGCGGCGCAGTGGGACGCTCAAAGGCTCCGGCACGAAAATGGGCACCGGTGGCGTGACAGGTGGAAGCAGCTCCGGAGGGAATGGGACTGGAGTTGTGCGCATGGGCATTTCCGGCGCTGATATCGTCACAGGGAGTCTGAACGGCCGCAGTGGTCATTGGGTAACAAATGGCTGCGTCAAGTTAcgagaaaacaacaaaacacgtGACTGCCCCAATGGGGATCAAACAGCCAATCAAAACCGTCTGTCGACGTATGACAATGTCCAGTTAAACCACCAGAAcgtgcagcagcagaaccacATCACCAACACGTGTCTGAACAGCAGCTGCGAGGACAAGCAGAGCGTAGACAGTGCCACCTGGTCCACCTCTTCCTGTGAAATCTCTCTTCCTGACAACTCCACTTCCTGTCGCTCCTCCACCACTACCTGCCCTGAGCAGGACTTTTATGGAGGTCAATATGAAGACCTGGATGGACCAGCACAGGACAATGAGCCTCCCCAGCCTGGCGGCGGAAGAGAAGGGGAGGGCAGAAACAGCAACAGAGAAGGAAGTGGAGGTGGAGCAGGAAGGAACAGTCGGGGCACCAGCAGTAGTGATAATAGTGATGTTTACACTGTTGGCAATGGACCCGGCAGTCACAGTGCTCTGCACAGTTTAGTGGCCAGTCTAAAACAGGAGATGCACAAGCAGAAGAACGAGTACGAGGCCAGGATAAAGAGCTTGGAGCAGCGTAACCTGGAGCTGGAGACGGAGATGGTGAGCCTCAATGAAGAGCTGGACCAGGAGAGAAAGAAGTACACCATGGCGGAGATCAAGCTGCGCAACGCTGAGCGTGCCAAGGACGACGCTGAGCGGCGGAATCAGATGCTGCAGAAAGAGATGGAGCAGTTTTTCTCCACGTTCAGTGACCTCACTGCGACTGGCAACACCACAGCCACCGACCCCCGCCGACCAGATCGTAACAACACCATCTGGATAAAGTGAAGGGAGGCGGGGAAGACTGGAAATGGTTTATTATATGATGTGATCATTACCAGGGCTCCAAACAGGATTTGGCTGCTGGTTGTTGAGGGAAGATTGGGAAGTTACAATGCAATGGTTGATggcatgttttaatttaaagaaaTAGGAGGTGTAGGGCTACAAGCCACCTGTATAAATGTAGACATCACCTGGAGTGATGCCAGACTGGCATTATCTGTAAATACAGCATTATTTAAACAGCTCACAGACTCTCCAACCTACTCAAACTGTGGTGGTTATCATTTATCAGACTGGGAAGAGGAGTAAAGGCACAGAACACCATAGTCTATGATGACACAcattacttttattatttttactttagcTCCTAGAGCCATATAGGAGGGAAGGCACAATGTTTAAAAAGGTTGtgttcagtgaaaaaaaacaacaaccttggACCTGAAAACAAAATAATCTAACCAAAAACATTGTTATTGTTCCATGTAATTCTGTATCTGCTTATGTAGGGAAACAATGCATAAAAAACAGTGTCATAtgtatgtaaaaagaaaagtaatacTTGTTTATCTGATATTTAAGCAAAGTTATCAATGTGCGATATTTTGTATTAAGATTTATCCTTGCACTTACATGTTTGTTTAGTGTCAGCAAGGTGGTACTGAATGTTTTGTCAGTCAATGTGTGTGCCATTGAAATcggacagtatactgtatatgtgcttGTGCTTCTGTGCTGTTTCATTTACCCCCATGACCAAAAAAAgagcctgtactgtaaatattttataGATAATCATAGACACTACTTGTTAGTCTGCACtgtggtttgacacatattcaGATGGATATGGCACGTGTTGAGTGGAAACTGAGGATGAAGAATGTTTTGTAGCTTGTAGAGATACATTTTAAGACTTGCACGATGGGTCATTGGCATCAATCCCAGATAGAATAAAAATGTCTGTGGTAAATTTAGAATTTCAGTTAACAAATTGTCTCTGTCCCCATTAACAGATGTGTAGCTGCTGTCAGTCTCTGAATGCTCGTGGAAATTACAGTTAGTCTTGAGGCTTATGAGATGCcagttataaaaaaatactgtCCTGACACAACTGGTTTTTATCCTAAAATAGCACAGAATAACAAGCTGCAGCAACAAAGTACCAACACAGAGTTGTGTTTGTTGGTCATAACTGTGAAAAAATTGGGATTATAGCATCGAGTGTGTCAACATTGAGGACATTAACAGCCTGGTGGCTAGATTCAGTAGcaagcggtgtgtgtgtgcatgatggTGCATGAGTCCATGTGGGCCGGTGTACAATAAGTGAATGTCTGTAAAGTAACTGCATATTGATGAAGTCTTTATGAGTGTATTTATGTAGCTTTAAGccaaatgtatacacacacacaatgtggaTTTTCTGATGGGTACAAAACAGACTGGACTTCTCTCAAAAAGAAGCTGCTGCTGGCTACTCTTCCTCTAAAGACTAGGTCCTTTTAAACCTGCTGCTGGTCAGTGCAGGACATCTGGAATGTGCACATAGGGTGGGAGAAAAAAAGTGCCTGAACAACTGAAGGAGAGAGTGGGGGACCTGCGTTTCTCATTTTGCAACCTCCACCGGGAAGTAATAGGCTTAAGCCGATCTGACAGTGGCACCTCGTTCTGTGAATTCCACACAAAAGAGCAGATTATGGACACAGggcaggagggagaggaggactGGGATAGTGGAATATTTTCATGACATGATACTTGATACACAAAAGAacttaaaaaaatgacttaatatgaataaaaatgcattttcatGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239429 lncRNA upstream 131457 22747108 ~ 22747326 (+) True G176908
TU239427 lncRNA upstream 164286 22713906 ~ 22714497 (+) True G176906
TU239426 lncRNA upstream 172659 22705726 ~ 22706124 (+) True G176905
TU239425 lncRNA upstream 216965 22661584 ~ 22661818 (+) True G176904
TU239424 lncRNA upstream 223958 22654610 ~ 22654825 (+) True G176903
TU239531 lncRNA downstream 633 22893156 ~ 22933645 (+) True G176974
TU239630 lncRNA downstream 212119 23104642 ~ 23116716 (+) True G177039
TU239631 lncRNA downstream 212119 23104642 ~ 23116716 (+) False G177039
TU239635 lncRNA downstream 242126 23134649 ~ 23134887 (+) True G177043
TU239683 lncRNA downstream 249206 23141729 ~ 23141935 (+) True G177079
XM_039779284.1 mRNA upstream 64637 22812118 ~ 22814146 (+) True esm1
XM_039779438.1 mRNA upstream 354378 22496714 ~ 22524405 (+) False LOC120545252
XM_039779440.1 mRNA upstream 354378 22515469 ~ 22524405 (+) False LOC120545252
XM_039779439.1 mRNA upstream 354378 22522848 ~ 22524405 (+) False LOC120545252
XM_039779314.1 mRNA upstream 407235 22439804 ~ 22471548 (+) False nedd4l
XM_039779286.1 mRNA downstream 44181 22936704 ~ 22984920 (+) True ptpn13
XM_039779285.1 mRNA downstream 85402 22977925 ~ 22984920 (+) False ptpn13
XM_039779287.1 mRNA downstream 92681 22985204 ~ 22989316 (+) True LOC120545187
XM_039778849.1 mRNA downstream 97631 22990154 ~ 22996841 (+) True sdad1
XM_039778850.1 mRNA downstream 105730 22998253 ~ 23008834 (+) True klhl8
TU239380 other upstream 341446 22531908 ~ 22537337 (+) False G176870
TU239368 other upstream 354415 22496413 ~ 22524368 (+) True LOC120545252
TU239244 other upstream 596620 22278880 ~ 22282163 (+) True G176753
TU238926 other upstream 1931728 20946684 ~ 20947055 (+) True G176526
unassigned_transcript_963 other upstream 3361477 19517235 ~ 19517306 (+) True trnac-gca_32
TU239589 other downstream 113744 23006267 ~ 23008812 (+) False klhl8
TU239701 other downstream 290150 23182673 ~ 23184262 (+) True G177094
XR_005636689.1 other downstream 548467 23440990 ~ 23458605 (+) True hnrpkl
TU239996 other downstream 830977 23723500 ~ 23727242 (+) True rpl37
XR_005636817.1 other downstream 831643 23724166 ~ 23724245 (+) True LOC120546142

Expression Profile