RNA id: XM_039779250.1


Basic Information

Item Value
RNA id XM_039779250.1
length 2661
RNA type mRNA
GC content 0.50
exon number 15
gene id nars1
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 6328407 ~ 6347650 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGCGGCTGGGCCAATGGGCTGGGCTGATGTAAAGTTACATTTTCCGCAGCTGCTGAATCAGAGCGGAATATACGCCACCTACAGTAGATTCTGGCgtttcatttccatttttttgaATAAATATTCTTCAGTTTCCACTTCTCAGCGGACTGTCTTAACACCTGGTCTGACATGGCGACGGAGATAACGAAAGGTGTGGAACAGGTCTCAGTGGGTGAGATGTATGTATCGGACAAATGTGGCAGTGACCAAGATGGGGACGGCACGCAGCAGAAACCCTTCAAAACTCCTCTCAAGGCTCTGATGTTCGCTGGGAAGGAGCCGTTTCCGACCATCTACGTAGAATcacagaaggagggagagCGTTGGGCCGTGATCTCTAAGACGCAGATGAAGAACGCAAAGAAGGCCTTTAACCGCGAGCAGATGAAGTGCGATGCCAAAGAAAAGAAGGAGGCAGAGGACAACGACAGGAGAGAGAAGAACATTGAAGAAGCCAAGAAGATAATCATTGAGAACAACCCCAGCCTGCCTACGCCTGAAACGGTTAAAATCCATCATCTGGAGGCCAAGAGAGGGCAGAGAGTCAAAGTGTTTGGATGGGTTCACCGCCTCAGGAGACAGGGGAAGAACCTGATGTTCATCGTGCTGAGAGACGGAACTGGTTTCCTCCAGTGTGTCCTGTCTGATCTCCTGTGCCAGTGCTACAATGGCTTGGTGCTGTCCACAGAGAGTACTGTAGCTCTGTACGGGACTGTCACTCCTGTTCCTGAGGGGAAACAGGCGCCCGGAGGCCACGAGCTGCACTGTGACTTCTGGGAGCTGATTGGCTTAGCTCCAGCAGGCGGGGCAGATAACCTGCTGAACGAAGAGTCGGATGTGGACGTCCAGCTGAACAACCGACACATGCTGATCAGAGGAGAGAACGTCTCCAAGGTCCTCCGAGTGCGATCCACCGTCACGCAGTGCTTCAGGGAACACTTCTTCAGCCGCGGATACTACGAGATCACTCCTCCTACCCTGGTGCAGACTCAGGTGGAGGGCGGCTCCACACTTTTTAACCTCAACTACTTTGGCGAGCAGGCGTACCTGACGCAGTCCTCTCAGCTTTACCTGGAGACCTGCATACCTGCCCTGGGCGACACCTTTTGCATCGCCCAGTCGTACCGGGCCGAGCAGTCCCGCACCCGCAGACACCTGTCCGAGTACACTCACATCGAGGCCGAGTGTCCCTTCATGACGTTTGATGATCTGCTGAACAGACTGGAGGATCTGGTGTGTGACGTGGTGGACCGAGTGCTCAAATCCCCCGCCGCACCGCTGCTCTACGACATCAACCCAaACTTCAAACCCCCCAAGAGGCCATTCAAGAGGATGAACTACACTGAAGCCATCGAGTGGCTCAGAGAGCACGACGTCAAGAAGGACGACGGCTCCTACTACGAGTTCGGAGAGGACATCCCTGAGGCTCCAGAGCGGTTGATGACAGACGCCATCAACGAGACCATCCTGCTTTGTCGTTTCCCGGCTGAGATCAAATCCTTCTACATGCAGCGCTGTCCCGAGGACAAACGCCTCACCGAGTCGGTCGACCTGTTGATGCCAAATGTTGGCGAGATCGTCGGAGGCTCGATGCGTATCTGGGACGCCGAGGAGCTGCTGGAGGGATACAAGAGGGAGGGAATCGACCCGACCCCGTACTACTGGTACACTGACCAGaggAAGTACGGCACGTGTCCTCACGGCGGTTACGGTCTGGGTCTGGAGCGTTTCCTCACTTGGCTGCTGAACAGACATCACATCCGAGATGTCTGCCTGTACCCCCGATTCATCCAGCGCTGCCgaccctgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactctatctgGACCTGGCATGTGGCAGCACCCTGTGAGCCATACAACGTGTTGCTACAATATTAAATACAATCGCAAAGAATTCAGTTTTGTCTTTTTGGCTCAAACCTCAAGCAAAGGGGAATGTCTTCACTCCGACAGAGTTAGATATCACCTCTGCCTCAAACTTCACAGcttcctttttgtttgttctgaATTAAAACCTGAATCAGATAATTGCTCGTTGGCCGATTTCAAATAGTAAACACTGTAGTTTCCTGTAATTTTCTGCAAGTCCTGGactaaaatgtctcaaatgtgGTCTTGAATGCTGCTAAATAATAGCTCTTTCCACCTTAAATTCAGTGTTTTTAacttactatttattttattaacattgTTCATAGGACATACACCATCCTGACTGTCTTGGTGGTTTGCTGAAGTTTATTCTCGTCATTGGTGGGTTCAGACTTaaatcacaaaaaacaacagctgCTTTTGTGCACTTTTCACGTATTTGGGAACATTTTACTTCTCATCTGAAATAAACCGCTAGGTCTAGAAATCAAAGGTAGTAATATAACATGGGCAGCAGCCTGTCCATCAAATTGGTTTAGAAATTGGCATTGGGTCTCATTATGTTTATGTTTCTGCCTTTTCATCTGAAAATACTCAACTCAATAAACTGTACTTGAATAAATGGGATTCAAACAGA

Function

GO:

id name namespace
GO:0006421 asparaginyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004816 asparagine-tRNA ligase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K01893 NARS, asnS; asparaginyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234696 lncRNA downstream 292 6327187 ~ 6328115 (-) True G173335
TU234685 lncRNA downstream 44207 6270430 ~ 6284200 (-) True G173324
TU234697 lncRNA downstream 58030 6270079 ~ 6270377 (-) True G173336
XR_005636616.1 lncRNA downstream 106700 6219459 ~ 6221707 (-) True LOC120545015
TU234644 lncRNA downstream 110855 6216568 ~ 6217552 (-) True G173290
TU234727 lncRNA upstream 23381 6371031 ~ 6371737 (-) True G173361
TU234726 lncRNA upstream 26555 6374205 ~ 6374489 (-) False LOC120544971
TU234785 lncRNA upstream 107947 6455597 ~ 6495899 (-) True G173410
TU234793 lncRNA upstream 151217 6498867 ~ 6499147 (-) True G173418
TU234851 lncRNA upstream 814074 7161724 ~ 7162217 (-) True G173467
XM_039779249.1 mRNA downstream 6254 6297741 ~ 6322153 (-) True fech
XM_039780166.1 mRNA downstream 408935 5907359 ~ 5919472 (-) True LOC120545633
XM_039780162.1 mRNA downstream 421707 5900452 ~ 5906700 (-) True LOC120545631
XM_039779936.1 mRNA downstream 442979 5858973 ~ 5885428 (-) True ccni
XM_039778997.1 mRNA downstream 754628 5566039 ~ 5573779 (-) True LOC120545046
XM_039780192.1 mRNA upstream 5563 6353213 ~ 6362103 (-) True txnl1
XM_039778878.1 mRNA upstream 20657 6368307 ~ 6374483 (-) True LOC120544971
XM_039780365.1 mRNA upstream 840545 7188195 ~ 7274967 (-) True LOC120545786
XM_039780364.1 mRNA upstream 840545 7188195 ~ 7226552 (-) False LOC120545786
XM_039778912.1 mRNA upstream 947859 7295509 ~ 7297921 (-) True LOC120544992
XR_005636634.1 other downstream 927729 5396633 ~ 5400678 (-) True LOC120545230
XR_005636624.1 other downstream 1431050 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other downstream 1431050 4849948 ~ 4897357 (-) False odf2a
TU234194 other downstream 1557104 4770817 ~ 4771303 (-) True G172920
TU233934 other downstream 2180652 4141853 ~ 4147755 (-) False cdk9
XR_005636815.1 other upstream 473162 6820812 ~ 6820866 (-) True LOC120546140
TU234856 other upstream 805220 7152870 ~ 7160087 (-) True G173470
TU235162 other upstream 2010073 8357723 ~ 8358027 (-) True G173727
TU235313 other upstream 2277832 8625482 ~ 8633899 (-) False LOC120545754
TU235399 other upstream 2722512 9070162 ~ 9071208 (-) True G173900

Expression Profile