RNA id: XM_039779259.1


Basic Information

Item Value
RNA id XM_039779259.1
length 3070
RNA type mRNA
GC content 0.48
exon number 13
gene id bmpr1bb
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18906742 ~ 18966325 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGGGAGCTGTACGCAGGACGACGCGAGATTTAACCAGCCCCAAACGCGTGGTACACTTGGAAAAGTCTGCCGCAAGACAGAgggacacacatgcaaacaaaacagagcacgGTAGAGTTCAAAACAAGACAAATTGGGATCCTGTCGAGCTGCTGTTGAACCGAAAAGGAGACGagaAAGACGAGTGCTGGAGCGGTAGCTGGGTACAGTGACAGGATGCTTTCTGATGACCTATGTGTGGATGGCTGTCAGTGTGGAGTAGTGCTGGAGGCTGCGGGGCTGCTGTGTGCTGTGGGAAGTTCCTGAGAGTGCAGAAAGGCCGAGTGGCAGTCACTCACAGAGAGACACTTGTGCAGAAAGTGGACTGGTGCTATTTCACGGAAGGATATAAAACCCAGTCTTACACCTCTGCCTCTTTGCACCGGTGTGTTCGTTGTGGCTGCGCCTCAAGGATTTGAAGGAGGCGGGCGACTGGGGTTGGTGCTTGTGCTGGAGTAATGGTGGTGGTGAGGCTGCCTCAGGAGTGGGCCTGGCAGGCTGTTCTCCTAATGACTGGACTGGCATCACTGAACCGTGGTTCTGATGCCAACATGTTGGACACCATGCTGCTGAAGAACGGATGGAAGGGGGGATCAGAGCGAAGGGCGGAGATGAGCAGCAGCACAGCCACTCTTTCAGCTCAGAAAGTGCTTTGGTGTCACTGCTACCACCAGTGCCACCCAGACTCTGTCAACAATACTTGCATGACTGATGGTTACTGCTTCACCAtggtgaaggaggaggaggggggtctGGTGGTACACACTGCAGGTTGTTTGCCTCTTGCCGGCTCCGAGTTCCAGTGCAGAgaCACGGGGAATGCACGGAGCGCTATCGAGTGTTGCACGGATCAGGACTATTGCAACAGAGACTTGAATCTTACTATTCCTCCACTTATGCCGTCAGATAACGATGACAGCAGTATTCAGTACATGGCTCTCTTCATTTCAATCACAGTCTGCAGCATCATCCTGGGTCTCATCCTCGTCTTCTTCTACTTCAGATATAAGCGTCAGGTGTCACGACCACGCTACAGTATCGAGCTGGAGCAGGAAGAGACCTACATCCCCCCTGGGGAGTCACTGAAGGACCTGATAGAGCATTCCCGCAGCGTCGGGTCTGGCTCTGGGTCAGGACTCCCTCTACTGGTGCAGCGCACCATCGCCAAGCAGATTCAGATGGTTAAGCAGATTGGAAAAGGACGATACGGAGAGGTCTGGATGGGCAagtggagaggagagagagttgCTGTCAAAGTCTTCTTCACCACAGAGGAAGAGAGTTGGTTCAGAGAGACTGAAATATACCAGACCTTCTTGATGAGACATGACAATATACTGGGATTCATAGCAGCAGATATTAAGGGAACCGGCTCATGGACTCAGCTCTACCTAATTACAGACTACCATGAGAATGGATCTTTATACGACTACCTCAAGTCCAACACCTTAGACGTCAAGGCTCTGCTGAAACTGGCCTACTCGTCCATATCAGGCCTCTGTCACCTGCACACTGAGATCTATGGCACACAGGGCAAACCAGCCATCGCACACCGAGACCTGAAGAGTAAAAACATCTTGGTAAAAAAGAATGGATTCTGCTGTATAGCAGACCTTGGACTGGCGGTCAAGTTTAACAGtGACACCAACGAGGTGGATATCCCTCCCAACCTCCGAGTTGGGACAAAGCGCTACATGCCGCCTGAAGTGCTGGAAGAGACCCTGAACAGGACCTACTTCCAGTCTTTTATAATGGCTGACATGTACAGTTTTGGCCTCATCGTTTGGGAAATGGCCCGACGTTGCATCTCTGGAGGCATTGTGGAGGAGTATCAGCTGCCCTATCATGACCTTGTGCCCACTGATCCGTCCTATGAGGACATGATAGAAGTCGTCTGCATTAAGAAACAAAGACCTTCATTTGCTAACCGCTGGAGCAGTGATGAGTGTCTACGGCAGATGGGAAAACTGATGTCTGAGTGCTGGGCTCACAACCCAGCTTCTCGCCTCACAGCGCTGAGAGTGAAGAAGACCCTAGCGAAGATGTTGGAGACCCAAGACATCAAACTGTGACGGAGAGTTAAGAGAGATGCTCTCATCACCAGGGACTTGTGACTGCCACTGGCATAGCGCCACTTACACTGGCCAATAGAAGAAAGGGAAGATAAAAAAGAGAGACTATGAATGATAAGACAAAGGATACTGACAGAGAGGATGAGTGATGGCGATAACGGTAGACAGGGAGCCAGAAAAATGAGGCAAAAGATTTATTATGTCAGGGGAAATCTGCCTTCCTGTTGTCTGAGCTGCCTCTGCCTCAGACCAAGTGTTCAGGTTGTGCTTTCTGTGAAAGCTGAGTAGTTGTCGGGTCCAGACTGTACCATAGGGCAGGAGGACAGGGACCCTTGCAGGTGTGGAGCCCTAAAGTCCTCATTAGTTCTAAACAGAGGAAGCTCTGCCCTTCTAAAGCCATATAGCAGTATTCTATGTACAGTCTTTTGTACTGTCACAGCTgcctttgtgtttctttttttgactGTCACTGTCAACCATCCAAAGAAATGTCTAATTCATGCTCAGTGACCTCATTGTcaattatgttattattattattattgcaaaaCAAAGTAAGACAAAATTTATGATAAATCATATGTCCAGAAGGAACAGATATTTCTATATAGTATTCCTATGTAAATTTTATTTCAATGTTAAAATAAGACCTCTACGTGAAACATGTATCATCATTGATGAATTTGTGAAAGTTGGTTGTCCTTCAGAGCTGAGACGAAGGCCTTGCTCTCCCTTTCCACTCGCAATTCATTTGTACATAATTGAGCTGAAATCTATTGATAATTATTGCCTTTCTGgatgttaaaatgtgtttttgatgaTTTGTGTACAGAATATGTCCCGTCCACTCTACCACTATGGCATGTGCCTTATTTAATCTGTACATATGTGATTAATAAGAGTGTATGAGTGGATCTGGATAACATTCCCCCAATAAAAACAACTATGTGTCTCAAA

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004702 obsolete signal transducer, downstream of receptor, with serine/threonine kinase activity molecular_function
GO:0005024 transforming growth factor beta-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238220 lncRNA upstream 52194 18851078 ~ 18854548 (+) True G175973
TU238221 lncRNA upstream 69988 18836175 ~ 18836754 (+) True G175974
TU238139 lncRNA upstream 220014 18676044 ~ 18686728 (+) False srsf9
TU238127 lncRNA upstream 232777 18670383 ~ 18673965 (+) True G175925
TU238118 lncRNA upstream 248458 18657690 ~ 18658284 (+) True G175917
TU238449 lncRNA downstream 432845 19399170 ~ 19402367 (+) False LOC120545529
TU238472 lncRNA downstream 521985 19488310 ~ 19492082 (+) True G176173
TU238477 lncRNA downstream 529711 19496036 ~ 19502184 (+) True G176177
TU238529 lncRNA downstream 596921 19563246 ~ 19565919 (+) True G176225
TU238530 lncRNA downstream 600614 19566939 ~ 19567169 (+) True G176226
XM_039780060.1 mRNA upstream 880 18868353 ~ 18905862 (+) False pdlim5b
XM_039780158.1 mRNA downstream 210814 19177139 ~ 19191949 (+) False glis3
XM_039780155.1 mRNA downstream 210815 19177140 ~ 19193398 (+) False glis3
XM_039780156.1 mRNA downstream 210815 19177140 ~ 19193398 (+) False glis3
XM_039780157.1 mRNA downstream 210815 19177140 ~ 19193398 (+) False glis3
XM_039780154.1 mRNA downstream 210816 19177141 ~ 19193398 (+) True glis3
TU238143 other upstream 182957 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 220014 18676044 ~ 18686728 (+) False srsf9
TU238154 other upstream 220014 18676044 ~ 18686728 (+) False srsf9
XR_005636603.1 other upstream 358601 18536631 ~ 18548141 (+) True myo1hb
TU237773 other upstream 829240 18076239 ~ 18077502 (+) False LOC120545364
TU238450 other downstream 413952 19380277 ~ 19387442 (+) False LOC120545529
unassigned_transcript_963 other downstream 550910 19517235 ~ 19517306 (+) True trnac-gca_32
TU238926 other downstream 1980359 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 3312555 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 3530088 22496413 ~ 22524368 (+) True LOC120545252

Expression Profile