RNA id: XM_039779311.1


Basic Information

Item Value
RNA id XM_039779311.1
length 5774
RNA type mRNA
GC content 0.49
exon number 28
gene id nedd4l
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 22423582 ~ 22471548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggaagaaaaaagaaaaagaaaaaaggggatCAGTCATCGAGCCAGCCAAAGGAGAGAAGTGGGCGACACTGAGAGACAGAGGCTGGAGCCAGAGGAGAGAACCAAACAGCCAGTCAGAGAGAAAGCGAGAGGGAACGGGAGCTGTGGGACAGGAGGTGAAAATGGCTCAACGTCTGCGTTTGTACTTTGGCTCAGGCCGCAGTAACACAGCCCCGGAGATACTGGAAGGAGACTCTGAGGAGCATCAGGGAGACAATGATGTGGTCGCTGCGCTCCGCATGCAGCCACCTCCGGTGTCGATGCCTTCTCAGGAGCTAGCTGCGCAGCATGCCCCACCAAGAGCTTTGCGGCCGGAGCCTTCGCTTAAACGCAGCTCCTCCATGTTCATACCCCAGCTTGCCGCCTACGCTGAGTCTCGGCCCACCAAGAGCTCCTCCATGCACATCTCCCTGCAGCGTTCCAATGGATCAAGTAATGGAGATTCCCGTGGTTATGCTGATGATGTCCCGCCACCCTGTTATACTCCTCCAGGACCCGCTCCTGCCTATACCGAACCACATGTCCAAGCAGATGTTCCACGACACCCGCCTCCTCCGTACAGCCTAGATACTTTAAACTCACAAACTTTTCTGACGGAGCCGAACCTGCCCAAACGGAGGGTCTTTAGTATTGGCTCCAATGGCCATACCCTGTATAGCAGAGGCCAACCTGGTATCAGTGTTGGTGGTATCAGTATCCAAAGGAACTCTCCTGACTGTTCTGATATTCAGCATTTCAGAATCCACCCTTATAGTGGTACTGGCTGGTCTGTCCAGCAGCAGAGCTTGGACCAGTGCTCTGTTGTTAATGGTGGAACACAGAGACTAGTGTTTCAGCTCCAGCAAAACCAGAACCAGGATCAGAGCCAGGGCAGGCAACAGGCTGCCGCATCCCAGGAAGAATGCACAGATGTTGCCTTTGCCAACTCAAGAGGTAGCCATGTAGTGCGTTACCCCAAAATTCGACTGGAGAGAAGCTCGTCTCATCAAAGGCTGTTGCTGGAAAATCAACACCAGGAAACTGGGGCAGATAACCAAGCTGTAGAGGTGAACCAAACAGAAGCAAGAAACCGATCTAATGGCTGCACTTTCAAAATCAGTAGGGATTCTTCCAGGAGGCAGCCTCATTTCAAGATATATTTTACTCCAGGCGGAGGTGGAGATCAGGATGTGTGCCTTGGCAATGATTCAACAAGGACTAATCCCAAGACCAGAGATGATTTCCTGGGACAGGTTGATGTTCCTCTTAGTCATTTGCCGACAGAGGACCCTGCTATGGAGCGGCCGTACACATTTAAAGACTTCTTGTTGCGGCCCAGAAGGTCAGTTTCTGCAGGACGTGACAAACAGGATGTGACAAGTAAACATCACAAGTCCAGGGTGAAGGGTTACCTGCGTCTGAAGATGGCCTATCTGCCCAAACAAGGAGGACCCGAAGAGGAGGCTGGAGAGATGAGGGAAGAGGCTGAGGGATGGGATGAGTCTGCAGACTCAGGCTCCCAGCGACCCCAGCAGTTGCTTCCTCCGTTGCCTCCAGGCTGGGAAGAGAAGGTGGACAACCTGGGACGCACCTACTATGTCAACCACAACAAACGCAACACACAGTGGAAGCGGCCCTCCAACATGGATGTGATTTCAGAGACTGAGAGTGACAATCAACAGCGGCAGATCAATCAGGAAGCACACCGTGTTTTCCGTTCGAGACGTCACATCAGTGAAGACCTAGAGAACGAGCAACAGGAGCCCAGGGACATGGACAATTCCTGGGATCTCATCACAGAAGAGGATCCTAGCGAAAGCCTGGCCCAGTCTCTGCCTGGCCCCTCTTCAGTCTTGACACCGCAACTAGCGCAGACACCCGTCACCCAGGATTTCTCTGAAGATTTAAATCTGAGGCTGTCACTTACTCCGGATACCAACGGCGAAGTGCCAGGGCCCAGCTCTGCTCTGAGCCAGCTGTCAAACAGACTCCGATCCTCCAGTATGACGGATGGTGTCAGTGATCAGGCCCAGGCTCCTCCTCTTATGGCTTCCCAGACCAGAAGAACAAGAGCTCAAACTGTCTCAGGTGGTGAGGAGGCCATGTCTCCCTCGGCGACTGCTTACGCATTGACCACCCCTGGCCTGCCCCCTGGatgggaggagaggaaggacgGCAAGGGAAGAACTTATTACGTCAACCATAACAGCCGCACCACTACCTGGACTAGGCCAATTGCGCAGCTGACTGAAGACGGAGCCATcacctcagcagcagcagcagaagcatcAGGAGGAGCCTCGGCCCCGACACCCCCatccaccccctcctcctcttccaatGCCTCCAACAACCACCTCCATGAGCCCCAAGTCCGACGACCTCGTAGTCTCAGCTCCCCTACTGTCACCCTTTCCACCCCCTTGGAGGGAGCCAACAACATCCAGGTGCGGAGGGCTGTAAAGGACACATTCTCCAACCCGCAGTCTCCCCAGCCGTCCCCCTACAGCTCCCCCAAGTCCCAGCCCAAGACACAGCAGAGCTTCCTGCCCCCAGGCTGGGAGATGAGGATAGCCCCCAATGGACGGCCTTTCTTCATCGACCACAACAGCAGAGTCACCACCTGGGAGGATCCCAGGTTGAAATATCCAGTCTATATGAGGAATAAGAACTCAATGGAGCCTGGTGAACTTGGTCCTCTTCCTAACCTACCAGAGGAGCCTGGATGGGAAGAAAGAATTCATTCAGACGGACGCACCTTCTACATTGACCACAATACCAAGAACACACAGTGGGAGGACCCTCGTCTGCAGAGTCCGGCTATCACAGGACCTGTTGTTCCCTACTCCAGAGAGTTCAAGCAGAAGTACGACTACTTCAGGAAGAAGTTGAAGAAACCGGCTGACATTCCCAACCGATTCGAGATGAAGTTACACAGGAACAACATCTTTGAGGAATCGTACCGTCGAATCATGTCCCTGAAGAGGCCTGATGTTCTGAAGTCACGGCTGTGGATCGAGTTTGAGTCCGAGAAAGGATTGGACTACGGCGGTGTGGCCAGAGAGTGGTTCTTCCTCTTATCGAAGGAGATGTTCAATCCTTACTACGGCCTGTTTGAATACTCTGCTACAGACAACTACACACTCCAAATCAATCCCAACTCTGGCCTGTGCAACGAGGATCACCTCTCCTATTTCAAGTTCATCGGACGTGTGGCAGGAATGGCTGTGTTTCATGGAAAACTACTGGATGGTTTTTTCATCCGACCCTTCTACAAGATGATGCTGGGAAAACAGATCTCCCTTAAAGACATGGAGTCTGTGGACAGCGAATACTACAACTCGCTGAAGTGGATCCTGGAGAATGATCCCACTGAGCTGGACCTGAGGTTCTGTATTGACGAGGACAACTTTGGACAGacgTACCAGGTCGACCTGAAGCCCAGCGGCTCAGACATGGTGGTGACCAATGAGaacaaaaaggaatacattgaCCTGGTCATCCAGTGGAGGTTTGTCAACCGGGTCCAGAAGCAGATGAACGCCTTCCTGGAGggCTTCACTGAGCTCATTCTCATAGATCTGATCAAGATCTTTGATGAAAACGAACTGGAGCTGCTCATGTGTGGTCTAGGTGACGTGGACGTCAACGACTGGAGGCAACACACTGTTTACAAGAACGGCTACTGTCCCAACCATCCTGTTATACAGTGGTTCTGGAAGGTTGTCCTGTTGATGGATGCTGAAAAGAGGATCCGACTCCTCCAGTTTGTTACGGGGACGTCACGAGTGCCCATGAATGGCTTTGCCGAGCTTTATGGTTCTAATGGACCTCAGCTGTTCACAATCGAGCAGTGGGGAACACCAGATAAGTTGCCAAGAGCTCACACATGTTTCAACCGCTTGGATCTGCCCACTTACGAATCATTTGAGGACCTGAGAGAGAAACTGCTCATGGCTGTGGAGAACGCGCAGGGCTTCGAGGGGGTCGACTAACGACAGCAGCCTCTGACTGCATCCAACcgaccaacaaacaaaaaaataaacgaAACAAAAAGCCACAGGGATCTCAAACCAGCTGCTGTAGCAGTTCTGTGCGAGCATGTTGTACTGTAATGCCTGACTGTGAGCCACTTCCACAGCACGGTGGCTTGAGACCGTACAGCGATTTGTCAAGCCAATATGCCTACATCTTTAAATCTCTTTTAGAGTGGGTAGGTCACTCTTAAAGGTGCTGGGGAAAGAACGGGAGTCGCACTGTTGAATGCTGAAATTATTATCCACAGGCATGAGCAATGAATGAGCTGGCCCCTGTGCTGTCGTTTGTTTCCCCCTCTACCCTCGTCCTGTGAAAATCTACAGTGCTGGAAAACACTAATGCATTTCAATAGCTACTTTATGTACACTATAGCACAGTATTCAAGCACCCGTCAGTGGAGGGGATTTAGCATGGCCTTAGTTTGGCTCCTACATGCACTATTTCTCTTAAGAAACGGCAATGGCACTATGATCACAGCTCTCTCAAATCCTTAGACCAACACCAGGTTACCTTAGGAATGCTGGCCAATCACATTTCAGGAAATCAGCCACACCCCTCCGTAGAGCCTTGTCTATATGTTGTGTGATCAGAAATCTCCgctgcagcctttttttttagcCACTGGAAAGGATTCACGAATAGGGTATAAGATactcatttttttgttgttattttgtcaTCATGgaacagatttcttttttaaatcattgGTATAATTCTTGCAGGAAAATACTCTTAACGTATTTGTACTGATGAACAATGTTTACTATTTTGACAATTCTATATGACATTTTGTGTGAAGTGTAAATCTGGCTAGTCTGGGAAAAAAATGATCCATATCATTTGTTACGGTCATAGCAAATGtattgaataaaatgttttttttttattgtagtgCTATGAAAGCAGCATGAAACTGTATCTTGTTTTTGCTTTGACGACATCGTAGTAATTTGGACGTGCACGGTCTCAAGGTCGAGAAGGCAAAACTAAAACGTAGGGATAGTTTCTCTgagacatttatattaatattctCATGCCTGTTGCTGTTCATAATGCTGTAAGTTGTTCTGGGAGTGGGGAGGGTTCTTTaatgatataaaaatatatgtatgaACTTAACAGAAGTATTACTGATCAACAACACTAAAATGAagctgtgtgtgcgcgcgcgtgagTGTTTGAGAGAAAAGCTGTGATTGCCACTGAACATAAAGCAGCACGTTTCTTACATAGAaaaagttttttcttctttatgtttttgtttctctctctcctttttctaaCACAATTGAACCTAAAGGGCACTTTATAGATCACTCTGAGGTAATTTTGCCTGTTGTATGTCTTTTGTCATTAACTTGAATGtgattcttttctcttttttttcctctccattCAGAGCACTTTCCTGGTGCAATATAAATAGTCTGTAAATCTGGGCTGCTGCTAAGGTAGAAAAAGTTGACAGAAGTGAAGCAGAGACTTCACATCCTTTTAGTCTTCTCgattttctctcttcttttgtccccccccccccctcccctccctcgtGTTTGCTCTCTCCTGTGGTCCCACCACTCAAACTGACTCCGTAAAGATTagtccttttttttaatgaatgaagGGAAATATCACTTTTGTTAAAGATTCCACCACTCTCTGGAACTCTCTGTGGTTCATTTAACTTCGGTCAAATAAAATGAAACTTCCCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239312 lncRNA upstream 37739 22400570 ~ 22402064 (+) True G176810
TU239311 lncRNA upstream 39475 22399609 ~ 22400328 (+) True G176809
TU239310 lncRNA upstream 40230 22396101 ~ 22399573 (+) True G176808
TU239305 lncRNA upstream 49116 22390264 ~ 22390687 (+) True G176805
TU239296 lncRNA upstream 63266 22375668 ~ 22376537 (+) True G176797
TU239330 lncRNA downstream 2817 22474365 ~ 22477715 (+) True LOC120546009
XR_005636771.1 lncRNA downstream 2832 22474380 ~ 22475824 (+) False LOC120546009
TU239381 lncRNA downstream 60360 22531908 ~ 22534295 (+) True G176870
XR_005636742.1 lncRNA downstream 66402 22537950 ~ 22540359 (+) True LOC120545780
TU239409 lncRNA downstream 87123 22558671 ~ 22560599 (+) True G176890
XM_039779294.1 mRNA upstream 55181 22377113 ~ 22384622 (+) True dnajc21
XM_039779295.1 mRNA upstream 55181 22377113 ~ 22384622 (+) False dnajc21
XM_039779265.1 mRNA upstream 67012 22369167 ~ 22372791 (+) True rad1
XM_039778999.1 mRNA upstream 211919 22168380 ~ 22227884 (+) False ctif
XM_039779438.1 mRNA downstream 25166 22496714 ~ 22524405 (+) False LOC120545252
XM_039779440.1 mRNA downstream 43921 22515469 ~ 22524405 (+) False LOC120545252
XM_039779439.1 mRNA downstream 51300 22522848 ~ 22524405 (+) False LOC120545252
XM_039779284.1 mRNA downstream 340570 22812118 ~ 22814146 (+) True esm1
XM_039779009.1 mRNA downstream 352752 22824300 ~ 22892523 (+) True arhgap24
TU239244 other upstream 157640 22278880 ~ 22282163 (+) True G176753
TU238926 other upstream 1492748 20946684 ~ 20947055 (+) True G176526
unassigned_transcript_963 other upstream 2922497 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 3052361 19380277 ~ 19387442 (+) False LOC120545529
TU238154 other upstream 3753075 18676044 ~ 18686728 (+) False srsf9
TU239368 other downstream 24865 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 60360 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 534719 23006267 ~ 23008812 (+) False klhl8
TU239701 other downstream 711125 23182673 ~ 23184262 (+) True G177094
XR_005636689.1 other downstream 969442 23440990 ~ 23458605 (+) True hnrpkl

Expression Profile