RNA id: XM_039779353.1


Basic Information

Item Value
RNA id XM_039779353.1
length 3154
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC120545215
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 595893 ~ 621737 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tggaCGCTGTTCTATTTTGAGCTAGGACAGCCCCTCAGACATCCATCAGATTCATGACTCTGGGAGTGACAGTATAAAAGAGCAGAGCTGCCTGCAGCATCTCCCACAGATCCTAAACAGCATTACCCCTGAAGTTTGAAGCAAGTTTGAAGATGTCGAATGAGAAGAACCCGGAGGTGGTGGGCTGCGAGGCCTACATCATGAAGAACGTGTGGGAGATCCGAGCGAGAGAGTATGACCAGAAGATGCTGCAGGAGCACGAACGAAGAGAGAAGAGCGCTCTGCCGTCTATTAACCAGGATTGGGCAAATCGTTTGGCTGCTAGACAGGGACATTACAAAAGGGTGCAGAGGAAACCTAAACCTGCTGAGAATcagaccaacaacaacaacgtctGGAAGAGCAAGCTACCACAGGCTACTCCTACTCTTCCACGTGGTAAAGGTTCAGGTCCAATCGGCAGACCAGGAGAACAAAGCAGAGGCTTCTCCACTCCAGCCCCCAACTACAAGGACAAAAAGGGGCAGaacaatcattttaaaaggctacaATTACTCATGTTTATCAGCCAGACTCAACCTTCTGCTATGGTGTGGGGGAAATCATGGAAGTACAACAAATGCTTGCCATTACCAGCAGAGGGCGATGAAGCTAGATCAGACTGGGGCCAGTGCTGGATGTTTGCTACCCAGCAGCCTCACACTGAAGCAGGCAGCCCTTGGCTAAATGGACCCAACCCCAACTTGATGGATGCTGACAGCCTCCATCTCTGGAAGAAACCTGACTACCGGATGGTGGAATCACAAGAGCTAGACTTAAGTATTCCCACTGAGGAGTGGCAGATGTCCTGGAGAAAATCGGACAAAAAAAAGATGGAGGATGCATCTGTCACAAATGGAGAAAATGTCGCAAAATTTGGATTCTTCACCTCACTGGTGGAGACTCAGCACCAAAATGAAGCCTTGTCCTCATCAGAGTGGAGCGAGTCATGGAAATCCACCAAGCCAGCAAGTCAGCGGGATCCCTTTGCTGTTTCAAATGATGGTCTAATGAATGAGTCTATTGCTAAAAAGCGGGATGATAGAGGGATGAGCTCCAAGTGGGAAGAATGTTGGAGGCTTGTCAACCACCATGGCTGCAACAAATCCAAGTTGCCTCAAAAATCTCACAATCCAGAGTGGGCCGATTCGTGGAAAGCAGCCATGGTCGTCTTCAACAAGCACAAGAATTCAGATCCCTCTCTAAGGCAAGATCACAGTGGTACCTATGAGGATCACAGCCAGCTGAGAGAGTCACATCTCCACAAAGTCATGCTTGTGTCTCGTGAGCAGAAGCATAGAGATCTGTATGTGCAGCTCTGCAATGAATTTAATGCTCTGTCTGAATGGAGCAAGTCTTGGCAGGTGACCAAAAACAACTCAAAACCATGTGAAGAAATACAGAAAGTTCTGAAGAACTCGCCACCAATGATGGAGACTGCTTTGGAGACTCAAAAGGTGGATAACAACACAAAGGAGCATTATTCAACATTGGAGAAAGCAGACTCATGCTATGAGCAACTGAAACATGATGTGATCTATCACCCAAAGAAAGAATTTGCTCAATCTAAGCTGCGCCAtctgaaacatctggaaaatgtTATGTCTGCCACAGAATGGATTGACTCCTGGAAGACACTGAAACACAGAATGAGAATGGAGAGAAGAAGAATGAGGCCTGACCCTTCAAGGCCTTTCAGGGGATCTGAACAGGGAGGAGACATGAAGCCCAATGCCTCAGAGTGGAAAGACTCGTGGAAATTCACCTCTCAGCCCCTGCGCCAGGAGCCGGAGCCTTGGCAGCAGGGTTGGTCCTCCACGCCCCAAATCAGAGTAGATCATGCTAGGGTTCAGAACCACTTTGCGCCTATGGAACTCCCTAAGAATGGGCCAACCGTGGAGTGCATTTGGGGAGAATCATGGAGGTTCTTGAGGCGCCAGCACCAATCAGAACCTGGGCAGGGAAGGGCACAAACTAGCCAAGCAAGTTCAAGTGTGGCTTCCCAACATCCTGGTGTTTCACAGGCACAGAGAAGGTATGCTAGGTCAGTTAATGATTGGCAGGTGGCCTGGATGGTCTCAGAAACTCCGTTCCACCATGACAGACCCTCCTTAACCCAGTGGAGGGAAGCCTGGAGGTGGTCTGTCTTTCACACAGAGCACTGGACTGAGCAAGTGGCTGGAGAGAATGAAGTGGATGTGTTAATGGAGATTCAACCTAAGAGAGAGAAGATTTCCTTGCAGAGAGCCAAAGCTAAAATGAGCCGGTCTTTTGACAACCAGATGTTCAGGGAAAGATATCCTGAGAAACAGTGGGAGGCTTCATGGAGAGCTGGGTCACTTCTGAGCCATCAAACGAGTCATTATGGATCTTCAGGGATACCTGGAAAAAGCATGAGCGGCATTACACAGCAGCAACATACTGCTGGGCATGGATCTAAGTGGGGAAGGTCATTCAGGATCGCCAACCCCATGCCCCACATGGAGCAACCCTGGCTGAAGTCCTCTCCTAACCAATGTCACTATACAGTAATGTGGTCAAGAGGAAAGAACatacagaacaacaacaaaaacttaaGCAACAACCCTGCAACCTTCAAGCTATGGGGAAATTCCCATCGGTTCCTACAGGGGGCCAGCGCACAGATCAAAGACCAAACGTCTAAGACACCGGTTGACCCCAGGGTGATTATCCCAAACAAGGCCAAATCAAGGAAGCATTTGTACTCTAACATTGAGAAGGAGAAACAATCACAGAAGAAGTGGGCAGGATGCCACCTGTTGGGTAAAACTCAACCACTTCCCAAGAGAGGCCGTGCTTCCGGAAAGACACTTAAGATGGAGGACAAAACTGCAGAAAAGTTCTTTGAGGAGTGGGTAGAATCTTGGAGGCTCTCAGTCCGGCCTGGTGGTCTGAAAAAGCAGATGCCTGTCAAATCGTTCTCAGGTTGGGATGAGTCATGGAAGTGCCTCATTCCACCATACCCGCCGATGAATGGCCCCAAGGCCAAATAGAAGGCACGGCTCAGTCAACTGTCAGCTCAGTCAACTGTCAGCTCAGTCAAAACTTGCCACACATAAACCAtgttaattaataaaaatatttgaataattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232745 lncRNA downstream 24989 570301 ~ 570904 (-) True G171719
TU232744 lncRNA downstream 28551 567019 ~ 567342 (-) True G171718
TU232700 lncRNA downstream 76823 518840 ~ 519070 (-) True G171680
TU232694 lncRNA downstream 115742 479794 ~ 480151 (-) True G171674
TU232649 lncRNA downstream 300608 295066 ~ 295285 (-) True G171636
TU232770 lncRNA upstream 67332 672472 ~ 684728 (-) False LOC120545599
TU232771 lncRNA upstream 67332 672472 ~ 745412 (-) True LOC120545599
XR_005636714.1 lncRNA upstream 67574 672714 ~ 745410 (-) False LOC120545599
XR_005636715.1 lncRNA upstream 67583 672723 ~ 745410 (-) False LOC120545599
TU232832 lncRNA upstream 275438 880578 ~ 880789 (-) True G171792
XM_039780834.1 mRNA downstream 31111 533379 ~ 564782 (-) False nek6
XM_039780833.1 mRNA downstream 31111 533379 ~ 564782 (-) True nek6
XM_039780443.1 mRNA downstream 136617 458084 ~ 459276 (-) True LOC120545827
XM_039780465.1 mRNA downstream 253516 302496 ~ 342377 (-) True mapkap1
XM_039780127.1 mRNA upstream 19820 624960 ~ 659720 (-) True crb2a
XM_039780105.1 mRNA upstream 147272 752412 ~ 846555 (-) True slc12a2
XM_039780106.1 mRNA upstream 148761 753901 ~ 846977 (-) False slc12a2
XM_039780444.1 mRNA upstream 278729 883869 ~ 951206 (-) True slc27a6
XM_039780445.1 mRNA upstream 361859 966999 ~ 987881 (-) True lmnb1
TU232928 other upstream 565063 1170203 ~ 1170789 (-) True G171868
TU233144 other upstream 991376 1596516 ~ 1602156 (-) True G172032
TU233470 other upstream 2379682 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 3281448 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 3536713 4141853 ~ 4147755 (-) False cdk9

Expression Profile