RNA id: XM_039779743.1


Basic Information

Item Value
RNA id XM_039779743.1
length 3472
RNA type mRNA
GC content 0.48
exon number 7
gene id rnf34b
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18342719 ~ 18360587 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTACGTTATGcttactccacacacacaggcagctgGAGAGAGGGAAGACGTAATGGTTTGATTCCCTGTGCATTTGCAATGGTCGTCGTTCTGACATTACTCGGCAAATTCCTCAAACGGAAGGTGCAATGAAGGCAGGAGCATCGTCCATGTGGGCGTCATGCTGTGGGCTGCTAAACGAGGTGATGGGCACGGGCACGGTGCGGGCGCAGCAGCCGGGGTTTGGAGCAGGGGCGGGGCCCTTCCGCTTCGCCCCCAGCGCTGGGTACTCCACCTACCCGCCCACCAGCTCAGGGAGCGCCGGACAGCTGTGCAAGGCCTGCGGACTGGCCTTCTCTGTCTTCAGACGCAAGCACATCTGCTGTGATTGTAAGAAGAGTTTCTGCGCCCTGTGCTCGGTGCTGCAGGAGGACCTGCGCTGCTGCACGACCTGCCACCTGCTGCGTGGCACGGCCTTCCAGAGGCCCCGGCTCATGCAGCTCCGAGTGAAAGACCTGCGGCAGTACCTGCTGCTGCGCAACATCCCCACCGACACATGCAGGGAGAAAGAGGACCTGGTTGACTTGGTGCTCTGTCATCAGGGGACGAGGGAAACCCCGAGACCAGTGGCGGAAGAGGACGAGGAGGAAGGGgacgaggaggaagaagaagaagaagaagaagaggaggaggtggaggaagatggagaggacacacatgaggaggaagaggatgaggaggaagatgaaggGGGAGATGACACAGACAGTCTGCACTCCCTCCCCCACTCGCTTGCCGCCTCGCCCCCCCCTGCCACGCGCTCTGCCTCCGAACAGTCGGTCCTCTCCGCCTCTCAGGGAGACGTGCTCAGCCCAAGTGACAGCTCAGGGACCACCAGCCAGGAGCAGGAGGATACTCCAACAGCTTCTCTCTTGAACCTGGAGCCCACTGAACATTTCGTGGAGGTCAGTCCAGCGACGCAGAGGAGGATCAGAGCCTCGCTGTCTGATCTGGACAATGAAGAGGCGATAGAAAACCTCTCCGTCCGCCAGCTGAAAGAGATTCTCGCCAGGAACTTTGTCAATTACTACGGCTGCTGTGAGAAGTGGGAGCTGCTGGAGCGAGTGCATCGACTCTACAGAGAAAATGAGCAGAACAGGAAATCCAtGGAAAATGTGAGCATAACTGCAGATGGTGTCAAAGCTCAGCTGGCGGCTGATGACAACTTGTGTCGCATATGCATGGATGCCATCATCGACTGCGTGCTGCTGGAATGTGGTCACATGGTAACCTGCACCAAATGTGGAAAGAGGATGAGCGAGTGCCCCATCTGCAGGCAGTACGTAGTGCGGGCCGTGCACGTCTTCAAGTCTTAaaactcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgcgtcagagTGGCCCTCAGGCGTGCATGCAGCCCGAGCCCTGAATTTATCACTGAGGATGAACTGCTGTGCATGACGTCTCGCAGGGCCTAATGCTGCAGCAGGCACGAGCAACTTCCCGGTCTTTGAAACCAGACTGTTGCCTCTGGCCTACCACCGTTTGTTGTCCCCTCTCCCTTACTAACTCATGTTCCAGTCCCACTTCTCCTCCCTGGTGGACCCTCATCAGCTGCACCGGGCCACTCACTCTTTGTCTGTTTAGTCAGTTAAACACACAGCAGAGACCCATGCCATCACTTTCTACTCTCTATTCTCCATTTAGATTTTACtcgcaggagaggagaggaggggaggtggTCCCATGGATACTTAAAGTGGCTCGGGTTGTTCTGTGTGGTCCAGAGAAGCAGAAAAATATAAGATCGCAGGGTTAGAGTCAATATGGTTTACACAGTCATGCCACATGACGCTGTGTTATCTCCCTCAGTGTTCTTTTAGGATGTGCaatatcagaaaaaaagagatttacatgtgttttattaagCGTCTATTTGTTAATCCGAACACCACATGCACCGGGTCATCTCGTCTCACACACAGGAGGGTGCAAGGTGCCAAACACCATGCCTTTTGATCGATTTTTGTTTAGGATTTCACGGTATATGCATCTCATAACCAGCAAGCTTGGTGTGatattttactctttttttttctcaaatgaaCTTTAGGAAATAAAGTGTGTACAAGTAAACATTTTTAACACTTGCTGTGTGAAGGATGTGATTGTTTCCTCATCTAGACTTAAGTGCACAGATGTGATTTCTGCCGAAGACACGAACAGGGAAAACTGCTGCTTGATCACACCACGTGCTGCACTACATTCCTGCTATTGCGCGTGAAGGTTCATTCGTCACATTTGAAACAGCAGCtgacaacaaaaagaaaattaaactcAAGGCCAAATTACTAGCTTTTTCCTGGGCTTTCAAATTTTGCGGCTTCATCAGCaggagtttgctcagttgtcatggagatgggTCAGCTTCCGTGACTTAAGGTGGTCGCATATGACGGGGAGATCATGTGAATGGCCTCATCCTTCTCCtgaggaagagagaaggagataGGAAAAAGCTAATTAGTGGACCTTAAGTGAAGCTTTTTTTGTACTATTTTTATCAAAGACTCATCCCTCTTTCATTTGAAATAACTGCCACCAAGCAATACCATTTAGTTTCCAAGTCTACCAAGTGTCTTTTGCTTTGATTGTGTTGTCCGTTAATGTGTCGAATCTTAGGTAGGTGACAGGTGCTACTTCCTCTTTTCTGAGTGTAACATCAGCATACCTGTCATATTGTCATGGTGTCCTTCCAAATATCCATCACAAAGTGAGAGGTAGAGGAAGCCTGGTTTACTTTAACCTGTTATGCAATTAAACTTTGTTTTCTTGTCACGAGATCCAGTTAACTCAGATGTCACTAAAATatctgtgtgtacagtatgccTGTGGtacgttttaaaaaaaaaaaaaaaaaaaaagaagctgaatTGTTGCTGTTAAGTGAATCgcatatatatacagtagcttATATTGTTGCTTACTGATAAGTcattatatgtatattttttcatttacttGGGAGACGACATGATTTAAAATTATGATAAGCCGTTTACCGTTTTTCAGAATGTATCTCTGCTGGTTTTGGTCAGACGAGTTCCTCAGTCCTCTGATCGTGTCACTCTTTCACCATTATTAAAGTTGCGTCAGTCATGGTCTCACTTTCTagcactttttgttgttgtcccaTTCAGATCAAATGCCGACACTGACATCATGCACTGTAACTCTGTAAGTCTGTTTGTTGATGCTGCTGTTTCTCAAAGATGTCATTCATGGGCAGCTACAGTATTATCAGAGTAGAAGGTTATCATGAGCACTCATAATCCTGGATCTTTATATATTGGAATGTTGAACCTTTTTATTTTGGTAAACAAGAGAAAATGATTTATTAGATTCAATAAAATGCAGTACTACAAACCAGAAA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU237831 lncRNA upstream 13927 18328441 ~ 18328792 (+) False lrrc75bb
TU237815 lncRNA upstream 103772 18235236 ~ 18238947 (+) True G175696
TU237814 lncRNA upstream 108557 18231033 ~ 18234162 (+) True G175695
TU237805 lncRNA upstream 133660 18207774 ~ 18209059 (+) True G175687
TU237785 lncRNA upstream 194172 18147542 ~ 18148547 (+) True G175670
TU237929 lncRNA downstream 35976 18396563 ~ 18399371 (+) False tmem120b
TU237927 lncRNA downstream 36017 18396604 ~ 18400446 (+) True tmem120b
TU237928 lncRNA downstream 36017 18396604 ~ 18399371 (+) False tmem120b
TU237930 lncRNA downstream 36017 18396604 ~ 18400446 (+) False tmem120b
TU237937 lncRNA downstream 60942 18421529 ~ 18422678 (+) True G175772
XM_039780805.1 mRNA upstream 13894 18295836 ~ 18328825 (+) True lrrc75bb
XM_039780705.1 mRNA upstream 72330 18261271 ~ 18270389 (+) True ggt5b
XM_039778869.1 mRNA upstream 143025 18193174 ~ 18199694 (+) True LOC120544962
XM_039779606.1 mRNA upstream 157832 18176145 ~ 18184887 (+) True anxa4
XM_039779746.1 mRNA downstream 24221 18384808 ~ 18387472 (+) False orai1b
XM_039779745.1 mRNA downstream 25123 18385710 ~ 18387472 (+) False orai1b
XM_039779744.1 mRNA downstream 25126 18385713 ~ 18387472 (+) True orai1b
XM_039779754.1 mRNA downstream 31152 18391739 ~ 18398879 (+) False tmem120b
XM_039779749.1 mRNA downstream 44791 18405378 ~ 18421449 (+) True setd1ba
TU237776 other upstream 265217 18075032 ~ 18077502 (+) False LOC120545364
TU237773 other upstream 265217 18076239 ~ 18077502 (+) False LOC120545364
TU237777 other upstream 265217 18076239 ~ 18077502 (+) False LOC120545364
TU237740 other upstream 269658 18067132 ~ 18073061 (+) False G175640
XR_005636764.1 other upstream 1086255 17241997 ~ 17256464 (+) False lhx6a
XR_005636603.1 other downstream 176044 18536631 ~ 18548141 (+) True myo1hb
TU238138 other downstream 315457 18676044 ~ 18686728 (+) False srsf9
TU238143 other downstream 315457 18676044 ~ 18723785 (+) True srsf9
TU238154 other downstream 315457 18676044 ~ 18686728 (+) False srsf9
TU238450 other downstream 1019690 19380277 ~ 19387442 (+) False LOC120545529

Expression Profile