RNA id: XM_039779784.1


Basic Information

Item Value
RNA id XM_039779784.1
length 8752
RNA type mRNA
GC content 0.51
exon number 22
gene id LOC120545456
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 14210874 ~ 14233346 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaggctgtaAGCTACAACCAGCAAAGCAAGTACAGGCTGTCTGGAACTTGTCAGTAGTAGAAATGAGGGTCGGTGCTGTGCAGTAAAGACAATGGACAGCACAGTCAAGCAGCCAGATGTTGCTCTTCATTAAACGCAAGTTAAATTATAAAGGCCTAATTAACAATGGGAAGTTTTGTGGCTGACCTGTTTCTGCTCTTGCTTATTTCTGCAGGACACGTTTATGGAGTGTCGTTCTACGGTGATGGCTACATCCACCTGCGGACAGTGGAGGCGTCCATTCAGACGTTGCTCCATGTACGATTTCGAACCTCCAGTCAGGCGGGGATGCTCTTTCTGGCAGCTGGACGCAGAGACTTCTTGCTGCTGGAGCTGATCTCTGGGCGCCTGCAGGTACGTCTGGACCTGGGCTCAGGTGAGCGTTTACTACACTCAGAAAAGGGCATCCATCTTAGCGACCTGGCGTGGCACTCCATAGAGCTGACCCACAACCGCCATAATGTCAACATGACCCTAGACCGAAACTTTCATACCAGCCTCCGTATGCCAGGACcagatctggagctcagtgtcGAGAATGGGCTTTTTGTTGGCGGGGCAGCTGGACTGAACCACCCATACCTTTTTAACATCTCCACCGGGTTTAGAGGATGCGTAGATGAAGTTGTGTTCAATGAACATAACCTGTTGTCCAGCCTAAGGCCCTATTCTGGGTACAAGAGCGTGCACGAGGTATCTCTGGGCTGTAATCCACAATTTTCTGCAACAGAAGAAGATTCTGTCAGCTTTTTCAGCTCTAAAGCATTTATCACTCTCCCGCCTTGGGAGGGGCCACAGGAGGGGGTGTTTGAATGTGAATTGTACCCCTCTGCAAGAGAAGAAGATGGCGTGGTCCTGTTTAGCTCTGGTAACCAGGGAGGGTTTGTTGCCATAGAGATCAAAGATGGTAACCTGGTGGCAACAGTAGGAAACGGAGAGGGCAGTAAGACTGAGCTGCGTTCTCTAACACATGTTCACAGCAACCATACCTGGTACCCCATCCAGCTGCACCTGCTTCCCAACAGCGTCCAGTTGAAGGTGGGTGAGGAGTTGATCAAGGCCACCCTGAGTCTGGAGCTCCAGGCTATTCAGCTCAAAGGGCCTCTCTTCCTGGGAGGACTGGACGAAGAAGCCCAGGGAGAGGCACGGCGAGCTGGGCTGATGTCCGTTGTGTCTGGGGGGCAAATGGCTGGGCAAGGAGGCTCCTTTAAAGGCTGCCTCCGAGAAATTAGGGTGAATACTCAAAGAACAGGCCTTCCTCATGCTGCCATAACCAAGGACATCACTGTGGGTTGTAATACAGGGCAAGCGACAAATGCACTGGCCACCACTAGCCCAACAAATCGTCCTGAGTTTGATGTTACAACCACACGACCAATTACCAACAATAAAAAGAACCCTAACTTTCTGATGCTGAGAAAGCTAGAAGTTGTGGAGGGAGGCTGGGCATCACTGGAGCCCAAACACATTAGGGTGAATCTGGATTTTCGGAAATTGGGCATTCATCCATCCCAGTTGATGTTCCGCATTGAGGGTCAGCCTGTCCACGGCCAGCTCCGGCTGGACCTCAGTCCTGACCCCGATGGAATGCTGGGCGAGGGGCAGGAAAGGACTATCACGATAGGAGCAGAAGAGGTCGACCGGACTTTCAGTATGCTGGACCTGTGGCAGGGTCGGGTGATGTACGTTCACAGTGGGTCAGAGGACCAATATGACTTCTTCATGTTTTCGGTCTTCTCCAGCAGTAAGACGAAGCTTCCTGTATTTCTGAAGAGCAACCGCCTGCATCGATTTGATATCAGCATCAGTCCTGCTAATGATGCGCCTGTGCTCAGCCTGCCGGAGGGAAACCTTTTCACTCTGCTGGAGAAGTCCAAACGACAGCTGACTTCAGATGTGGTGAGGGTGTCAGACCCTGACAGCAGTCCTGCAGAGCTGGTGTTCAGCTCCCTGGGAAACCTCAACACTGAGGCTGGACATCTTGAGCACCATGATTACCCTGGCAGGGCCATTAACTTGTTCTCTCTCAATGATCTGGAGGGGGGTAAGATCAGCTTTGTCCACACTGGGGTCCCCAACTCTCGGCTGGCACTCAGAGTCAGCGACGGCCTGAAGTTGAGCAACACAGTAGTTTTGAGGATTATGGCGGTGCCACTCGAACACAAACTGGTGAATTGCACTGGACTGGAGGTGAACCAAGGCGGGGCTTCCATCATCACAACCATTCACCTTGCAGTACAAGTTAATGTGGATGATCAGGCAGTGAAAATCCAATATGACGTTACAGAGTTGCCACAATATGGTGAGCTCCAGCGGTTGCACTCAAGTGGCGACTGGAAACGGACAACATCCTTCTCTCAGAAGCTTCTCGAAAAAGAACGGATCCGATACCTCAGCACTTACCACGGCCTTCAGACTCGGAACAACATCACTGATTACTTCAAATGTAAGATCAGCATCGGTTCCATGGCTACAGAGGAAGTCGTTTTCCCAATCAGGGTACACTGGATCCAGTTTAAGGTCACACGCAGCAAGATGGAAGTCAACGGTGTTCAGACTGCTGCTGTCACTCCTGAGGACCTCCATGTGATTTCTAAAGGTGTTAAACTTAATGAGAGTGACCTCTATTTTAGGCTCCTATCAGTGCCAAATAAAGGGCAACTATTCCTGGACAACAAAGTTCTAGTAAGGAACTCAACCTTCAGCCAAAAGAATATCACAGATGGCTTGATGAAGTACGAGCTCCTCAACATGCCGCACGATGACACAAGAGACACGTTCAGCTTTCAGGTGTTTTCAACGCATGCCAACTCAACAACTTACGACTTTAGAATAAACATCCATGCCGAGTCAACCGTCATCACCGTTGTAAACAAAGGCCTTTCAACCCTGGAAGGAGGAAGTAAAGTCATCAACAAAGAAATCCTGTTCACCCACACAGCAAGTAACCAGGAGGTCCACTACAGCATTACGGCGAGCCCTAGGCACGGGCAGATAAGGAGGATCAACCTTTCCAACTCAACTTCCATTAACGACAGCATTGTGACATTCACCAATCAGGATATCATTGAGGAGAGGATCATGTACGTTCACGATGACAGCGAGACCAAGCAGGATTCCTTCACTTTTCACATTATGGTTTACAAACCGCACAAACGCACCAGCAAGAAGGAGGATAGAAACATAGTAGAGCACACCTTTAATATCTCTGTGCAGCTCGTCAACGATCAGAGACCCGTCAGGGTTGTGGATAAAGTTTTCCATGTCGCGCGCAATGGGCAGAGGTTGGTGACGTTGACTGACATTCGTTACCGGGACGATGACTCAGACTTTCAGGACAATTGGTTGGTGTACACGCGGAGGGGGATTCCCATGGGAGAGCTGGTGCTGGCCAGCGATACTGGTCACAAGCTGTACGAGTTCACACAACGGGACCTCCAGCAGaaaaaagtgttgtttgtcCACAGAGGAGTGAGTTTTGGCCGTTTTGTGCTTTTCGTATCAGATGGGAAACATTACGTTTCAACGCTGCTGGAGGTGATGGCGCAGGATCCTTACCTTCAGGTTGAGAACAACACAGGCCTCATGGTCCAGCGAGGTGGGCTCACAACCATCACCTCTGCTAACCTCAGCATCTTCAGCAACCTTGACATCCGAGacccacaggaagtgacattTGAGGTCTTCCTTCCACCTAAACACGGCGTGCTGTGCTTTAATAATGGCAGTTGTGAGACTGTAACAGGCGCAAATCCAATTTCAATATTCACCCAGCAAGATTTGGTGGCAGGGCGCCTGGCGTATCGCCATGACGGCAGCCATGAGTTGTCAGATGGGTTCAATGTGACGGCAAGAGCAAAGGAGAAGAGCAAAGATGGAGtaatggacagagagagaagggaggtaCATTTGGACATCGGAGTGATGGTAAAAATCTACCTGGAAAGTCACCAGAGGCCGCCAACGGTCGTAAGTAACCGTCCAGTGGTAGTGGCGGAGGGACAGAATGTCTCCATTAGCAAGGAGCACTTAGAGGTGGTTCATGAGGACAGCCAGCCCTCAGAGATAGTTTTTACTGTCCAAAGTCACCCTGCCCTGGGCTTCCTTCAGAGGATTCCCCCCAACGACAAGCACAAGAACAACAAAGGAGAACAGCAGCGCCTCTATCGAGTACAGCCCACTGACTTCACAGAGCAGCCAACTAATTCCTTCACCCAGGAGGACCTGAACCAGGGAATGATCATCTACCATCAGCAGGCTGCAGGACACACCAACGACTCTGTTCTATTGGAGGCCACCAACGGGCTCACAATGGTCGGACCTATCAGGCTGGAGATTGACATCATCCCAATGCTGCTCCCTCTACAGGTGTCTGACTTGACCCTTGATGAAGGGTCGTCCCTGCCGCTGACTTCCGACATCATCAAGGTGGCCAATCGTCACTTCTCAGGGATGAACTTCCTGTACCAGGTCATCGTTCCACCGCGACATGGACACTTGGAGCACAGCCGGATCCCGGGAATGCCCATCACTGCTTTCACTCACACTGAGGTGGAACGTGAGTACATTTCCTATATCCATGACGGCAGCGACACACTGAGAGACAACTTTACCATTGTGGCTAATCAGACGGAAATCAGGAAGCACAGTCTGCCCTGCACCGCTCACATCAGTGTCATACCTGTCAATGATGAGACTCCTGTTGTTACAACCAATAAGGGTCTGAAGGTGTGGGTGGGTTCAGTGACAGAAATCACCAGAGATGATCTCCGAGCAGAGGACTTGGACACTCCTGAGTCTGAGGGGCTGGAGTTCATCGTCACACCACCCAGCAACGGCCACCTGGCCCTGAAGAGCGCTCCCTCCAGACACATCCTGAACTTCACCCAGAATCACATAGAAACCAGACAACTGATGTTCGTGCACAGCGGTGCTTCATCGGGTGGCTTTCACTTCCAGGTGAACGACGGCGTGAACTTTACCCCTCGCCGGATCTTCAGCACAACTGCCTACTCTCTGGCCCTCACCCTGCAGAGAAATCATCCCATGGAGGTCTACCCAGGCTCTGTGACCCCAATCTCTGACCTGGAGCTTCAGGCCACTACCAACGATGTCAGCGACATCAGAAGAAACCCCTCGGTGGTGTTTGCAGTGACCACTCCTCCTAAACTTGGCAGCCTGGTCCGACGTATGCCCGACAACTCTACACGAAACATTTCCACATTCACACAAAGCATGGTGAAGGATGGAGTTATCTTGTACGATCAGAACAAGCCACAGTCGGTGGGATGGTCGGCAGCAGACTCGTTCTCTTTCACCGTGTCCTCCCCTCCTGCTTTCCTTCCTCCGCACATCTTCACCATCCTAATCTCCTACCAGGCGAACAAACATCACGACAGAGCTCAACACAAGACCAGACTACTGAACAACGCAGGTGCTGTGGTGGCCGAGGGAGGCAGGGTGACGATTGACAGGTCAAAACTCGATGCCTCCAATCTCCTTGGGAAGGTTCCAGAGCCCCACCGGAAAGCCCACCAAATCCTGTATCGTGTGATTTCCCTGCCGCACCACGGGACTCTGTCTATACGAGGACATAACCTCACCAGGAACCAGCCTGATTTCTCCCAGGTCACCCTAAACAAGTTTGGCATCACATACGTCCACGACGACTCGGAGACGACGAGCGACAGCTTCACTTTCCGGGCCTGGGTGGCTcctttggatctctcctcctcttccttgtCTGCCTTTTCCTCCGATTCCTCGTCCTTTTCCCATCTTTATTCAGCCTTATCATCCTCCCCTTCGCCATTAGATGTTGTTTCTCCTCGGCGTGCCGAGGACAGGCTAGCAGTGACGGAGACGTTCAGCATCGCCGTGACGCCGGTCAACGACCAGCCGCCACTCATCAGGAGCAGAGCGCGGAGTATGAAGGTGGTAGTCGGAGAGAGGGTCGTACTAGGACCAGACTACCTGCAGGTCGAGGATCATGACACCCCTCCAGAGGAGCTGCACTACCTTGTGATCAGTAAGCCCAACAACGGCTACCTGACGCTAGGGGAACGACCGGAGCCGGTGACCTCCTTCACCCAGTACGACGTCAACCACGGCCGGCTGCACTTTATACAGCAGGGAGAGCCCTCAACAGGTGTTTTCTACTTTAACGTAACCGACGGTCATCATCGTCCGCTCTACAAGCTGTTTAGTTTGGAGGTGATGAAGCCCTCTGTCTCCATGGTTAACAACACTGGCCTGTCACTGGTTCAAGGCAGGACCGCTGTGATCCTGACAACCAACCAGTTTGCAGCTCAAACCAACAGTCGCACGCAGGCCGTCATCACCTACACGGTCACCACACACCCCCGCCACGGGCGCATTGCTATCAACGACCAGGAAGTCACAACCTTCTGCCACGAGGACCTGCAGTTTGGCCGCGTGGTCTATCACATGACTGATTTCAGCGAATCCGAGGACAGCTTCCAAGTCTCAGTGTCAGCCTCGTCCCCCGGTGTGGCCTATGGAAACGTAACGGCGCAGACGGTGAATGTAACTGTGCGCCCTCTGATCTACCTGAGGGAGCCAGTGAGAGTGCCCAGTGGTATCGCGGTGAAACTGGGGAAAGCCATGATCGACGCCTCCGAGCTGGCGAGAATCAGCCGAGCCGACCCGGTCTTTGAGGTTCTGTCTCCACCAAAACATGGAAAACTAGTCAAGatGACCTATGACCCTAACCGAGCGTCACAGGTCCTGACGTCGTTTACGTTCAGAGATGTGGTGCAAGGCCGCGTCGCCATCGAGGAGACTCTCAGTGATGGCGACAGCCGGCTGCATGACAACAACTCAGCACTCATAACAGCTCGAGGCCACGCCCCCGCCACACCTCTCAATGACTCTTTCATCTTCCTGCTGAAGGCTGGAAACGTCCAGCCAGCGAAGGGCGAGCTTCACTTCACCATCTTTCCCCACCACCAGATGCATCATGGTCCGAGCAGTTTAAATACGGAGGGTGCAAGTCACGAACACACGACAACCCGTCTTCCGACACACAATAAGACTACCACCGGAAGAGGAAGTGGGCGAGGGGGTTCCACGACGCTCAGCGAGGTTGGGGTGGGTTTGCCCCCCCACATTTCATCACATAAGAGCCACAACAGGACTCAGCACAAGTTGAGGCCTCACAGCCGCTGGGGGAACCACACACGCAGTGGGAGTCACGGAGGAAGATCGGGGAGTGGTGCAGAGGGAGCAGGGAGTCATAGTCATGCCCCACAACCCCACACCCCCTCTGTCTCAGACAGGCACGGCCCAGCGATCCCTCCGGACATACACCCGGTCCACGTTGAGGTGCTCCCTCGCCCCGCCTCCGACCCTCTCCATATTATCCTGCCGCTGCTGGCCTGTTTGTTCCTCATCATAATCCTCGTTATTCTGATTCTGGTGTTCCGCCGCCGCAAGGAGAAACAGGCGCGGCTGCGGCTCCTCCAGCAGCTCGCCGCAGTGGCGTTACCCACTGAGGACAGCCCTTACCTGGGCCGGGCGGAGCGCAGCGTGGCCATGCCCTCCGTGGTGGTCACCCCGCTGGGCTCTGTAAGCTGCCCTTCCTCACCCAGGGTACTCAGAAATCCCAGAAGGAGTCTGGCCCCTGGGATGACCTTCTGGGGGCCATTTGAAGCTGATGGAGCAGGTGGTGATGGGAATATTAGAGGTGATAACAATAACGAAAGAGATAACGTCACTGCAGGTTTCAAGACCTCTCTGAGATCTAGGTCCCTTACTCCGAATCTTAAAGACAACCAGTACTGGGTTTGATGGAAGTAATCCAAAGGAAAACTGTGCCTTAGAGGTGTATTTTTAGTTTAAGTGTATAAATAGCATGCACGTACTCTCCAGGGCACATCTGTAGTCATCTCAGGCACATCTGACCTGCTGTAAACTAAAAAGAGGACGAAAGTATGGACATTTGTTGAAGAAATTGTTCCTTTTTTGTAGGAAATGCATAACGGACATTATATTTAAGCCATTTCACTGAACTAACTTGAACCAAACACATATTTGTTGTAGTAACAATGTACTGAAAACGTTACCCAGCTACCTAGGAGGCGTGACGTGGTATGACATGAGCACGACCACCTTTGGTTTCCTTGTGGAAAGATATACAACTATTGTAACAGCCTGACAGATTCCTCAAAACACTGGTTTTAACTTCTATAGCTGTGATGTATTATAATTTTGGAACTGTGGCTGAACAAGGAAGTGAAACATAGACTGACGTGTTGCGCATTTACTGTAAAAGATTCAATGTAGCTGAATTTAAAGTTAGCTCAAAAAAGTAAGTGTAGTGTAACTGGTAACTGACACCTCCCACCCACAATACTGTAACTGTACAGAGTTGATGTGTTCATTCTCAAAAGCCATGTACGTCAGCTGTTAGATCACACTGCCATTTTGTAAATGTGACTAAAGGCACTGTAAGCTTCCAAGGCCATGCATGCAAACTATTGTTTTTAACACTGACCCCTCTTTAACTGCTCCGCACACCTTTGTGATTTTGTTACGGCTCAAGGCAGTTAACAATTCATAGTGAGACATAGGCAACTTTCTCAGTTCTTGACTGACTTATTTTTGTCAATTGTGACTCCTTATACTATGCCAGCCTCTGTTTGCCATGCACTGTGAAAGATTGAATTTTAATAAAAGATATGTCTTAAACA

Function

GO: NA

KEGG:

id description
K08115 CSPG4; chondroitin sulfate proteoglycan 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236378 lncRNA downstream 49710 14160119 ~ 14161164 (-) True G174644
TU236379 lncRNA downstream 49805 14160072 ~ 14161069 (-) False G174644
TU236363 lncRNA downstream 73698 14135438 ~ 14137176 (-) True G174629
TU236361 lncRNA downstream 75620 14132855 ~ 14135254 (-) True G174627
TU236331 lncRNA downstream 253674 13955268 ~ 13957200 (-) True G174606
TU236657 lncRNA upstream 346234 14579580 ~ 14584620 (-) True G174828
TU236662 lncRNA upstream 402924 14636270 ~ 14639963 (-) True G174832
TU236663 lncRNA upstream 402924 14636270 ~ 14661206 (-) False G174832
TU236684 lncRNA upstream 531937 14765283 ~ 14765483 (-) True G174838
TU236730 lncRNA upstream 756423 14989769 ~ 14989973 (-) True G174869
XM_039780011.1 mRNA downstream 13358 14189665 ~ 14197516 (-) True LOC120545561
XM_039780679.1 mRNA downstream 31308 14161662 ~ 14179566 (-) False snx30
XM_039780680.1 mRNA downstream 31310 14165726 ~ 14179564 (-) False snx30
XM_039780678.1 mRNA downstream 31310 14165726 ~ 14179564 (-) True snx30
XM_039780696.1 mRNA downstream 190423 13959302 ~ 14020451 (-) True plppr1
XM_039779786.1 mRNA upstream 5858 14239204 ~ 14241176 (-) False LOC120545458
XM_039779785.1 mRNA upstream 5858 14239204 ~ 14241176 (-) True LOC120545458
XM_039778841.1 mRNA upstream 68252 14301598 ~ 14317123 (-) False antxr2b
XM_039778840.1 mRNA upstream 68252 14301598 ~ 14317121 (-) True antxr2b
XM_039778844.1 mRNA upstream 95881 14329227 ~ 14341431 (-) False slc26a1
TU236126 other downstream 1819390 12390555 ~ 12391484 (-) True G174442
TU236123 other downstream 1852984 12356928 ~ 12357890 (-) True G174439
TU235941 other downstream 3046519 11161240 ~ 11164355 (-) False LOC120545042
TU235744 other downstream 4102591 10097376 ~ 10108283 (-) False gtf3c4
TU235686 other downstream 4336529 9861001 ~ 9874345 (-) False grin1a
TU236617 other upstream 247116 14480462 ~ 14483417 (-) True G174799
TU236652 other upstream 351353 14584699 ~ 14589020 (-) False G174827
TU236653 other upstream 351353 14584699 ~ 14589020 (-) True G174827
TU236655 other upstream 351353 14584699 ~ 14589020 (-) False G174827
TU236877 other upstream 1417391 15650737 ~ 15654486 (-) True G175000

Expression Profile