RNA id: XM_039779799.1


Basic Information

Item Value
RNA id XM_039779799.1
length 2919
RNA type mRNA
GC content 0.51
exon number 21
gene id pkn3
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 4677906 ~ 4732313 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAACCCAATTGAAACCTTTGACTCCGATTTGTTTCCATTATGGACATAAGTACACCCTCAATGGATCGCCTGTGAGCAGCCTCAGCAGTCGTTAAATTTCACATTCCGCTTTCAGTTTACCTAAGCTAGTGCAACTCCTCCTGAAGCTGTTTCTCTTAGGCCTACTTTCTGGCCCGAAGAAGAGCGTTGGCAGCTGCAGCAGATTTTGACGCTGTGTGAATGTCCAGCACAGACAAACTGACAGCCACCATGTCGGGTTTAACACTACAGCAAGGTCTGGAAGAGGGGGATATTCTCGACCCAGAGTTTCAGCAGCGTTTGGAAGATGCTCGTACTCTGCTTAGGCAGAAGATCCAGCGGGAGTTGAAGATCAAGGAGGCCGCTGAGAGACTACGGCGGGCCGTCACTAATCGCAAGAATGCAGCCGACGTGGAGGGCCAACTCAAAGCCTCGAGACGCAAGCTGGATAAGTTGCACTGGGAACTGCAGGAGCTCAATGCCAGGTCTATGGccacagagaaagacagcacCACagGTTGCTTGGAGGAGGAATACAACCTATCAGCCGAGTCATGTCAATGGGAAGAGGTTACATCACCAGTGGCTAGTCGAGTCAGAACCCTGAAGAAAcagcttaccatggagaccaaAGTTAAACAGGGTGCTGAGAACATGATCCAGACTTACACCAACAGCTCAGTCAAGGACAGGAAGATGGTGACTACAGCCCAGCAGATGTTACAGGACAGTCGCACTAAGATTGAGCTCCTGCGCATGCAGATTATCAAAGTCAGTCAAGCCAGAGACGAGCGAGATGGCTTGCAAGGTCACCCTGTGGAGATGATCTGTCCACTGGAGCTGCGGATAGCTGACCTCATGCACCACATGAAGATTGAATCAGCTGTAGCAGAAGGTGCCAAAAATGTGGTGAAGCAGCTGAGTGGGCGTAAGGTTCAGGACCGCCGCATACTTGCCGAGGCCCAGACCCGAATGCAAGAGTCCTCTCAGAAGGTGGATTTGTTACGCCTCTCCCTGGAGAGACGTTTAAGTGAGCTGCCTCAGGACCATCCCAAGCATGGTGCCATTAAGGAGGAACTAATGTTGGGAACCTCGCCTTCCTATGGGCTACCGAAGAAGCAATCCAACGATCCGTCCTCTTCTTCCTTCTTGTTCAAACCTGCCAGTCTAACAGGTCGGTTGGAGGTATGTTTAATGGGCTGCCAAGACCTGATGGAATCCGTTCCAGGCCGTGGTCATGTGACCAGTGTCTCAGCCAGCCCTGTAAGCATCTCAGATGGAAAGTCTGTGAAGGTGAGAACCGGCCTATCAGGACGCAGTGCTAATGGCAAGGCGACCAAGGCTGAGGACCTCTCATCGGAGATAAGTGCTGTGCTGAAGGTGGACAACAGGATAGTGGGGCGCACACACTGGAGACAGCTGGGCAAAGAGGCCTGGGGCCAGAGCTTCAGCATTGAACTGGAACGGTCCAGGGAGCTGGAAATTGCTGTGTATTGGAGAGACTGGCGAGCCTTAAGTGGGGTGAAGTTCCTGCGGCTGGAGGATTTCTTAGATAACCACCGACATGGCATGTGTCTCCAGCTGGAACCTCAGGGCATCCTCTTCATTGAGGTTAAATTTATCAATCCTGTCATTGAGCGGCGTTCCAAACTCCAGAGGCAGAGGAGAATTTTCCCTAAAGAAAAAGGGAAGGACTTCCTGCGTGCTGCCCAGATGAACATGAACTTTGCCACTTGGGGCCGTTTGATGATGAGCATCCTGCCTCCCTGCAGCTCCATGGAGCCCATGAGCCCTCCATTAGCAGTCCATAACACTGGCTCCCCATCATCCATCACTTCTCCTGCACGAGATCCTGCTGTGGTTGGTCTAAATTTTAATGAAGAACAACCTGGCAGATCTCCACATTGCACAAGAAAGAACACTGAAGACTCTCCACTACTGTGTCCTGGTGAGAACAAAAGCCCAAATCCCAAGCGACATCCCTCGATTTATCCACCCCCACACAGGGACGCAGGACTTCAGATGGAAGACTTCAACTGCATTTCAGTTCTGGGAAGAGGTCACTTTGGTAAGGTGCTGCTAGCAGAGTATAAGAAGTCAGGCAAACTGTATGCCATCAAAGCCCTGAAGAAAGGAGACATTGTGACACGCGACGAAGTCGACAGcCTCATGTGTGAGAAGCGGATCTTTGAAGTGATCAACACATCACAACATCCTTTCTTGGTGAACTTGTACGGCTGCTTCCAGACTGCAGACCACGTGTGCTTTGTGATGGCCTACTCCCCCGGAGGAGACCTcatgacacacattcataccagCATCTTCACTGAGAAACAGGCCTGGTTTTATTCTTCATGTGTGCTGCTCGGCCTGGAGTTCCTACaccaaaacaaaatagtttacAGGGATCTGAAGCTGGATAATCTGCTAATGGATGCAGATGGTTTTGTCAGAATAGCAGACTTTGGCTTGTGCAAAGAAGGCATGGGCCATGGGGATCGCACCTCAACATTCTGCGGCACACCAGAATTTCTGGCCCCAGAAGTGCTGACAGACAACAACTACACCCGCAGTGTGGACTGGTGGGGGCTGGGGGTGCTCATCTATGAGATGCTGGTGGGGGAGTCTCCTTTCCCAGGTGATGATGAAGAAGAGGTGTTTGACAGCATCGTCAACGATGATGTGCGCTACCCTCGCTTTCTTTCTCCTGAGTCTGTGTCCCTCATTCAAAAGCTGCTGCAGAAAACCCCTGAGATGAGACtcggagcaggagaggaagacgCCTCGGAGATCAAAAGACACAAATTCTTTCAGGTCATTATCCAGCCAGGCGCTGCTAATCATCTTGCTCTTCACTTCTTCATTACAAAACAAGTATCTGACTGACTGTTCTTTAGAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234080 lncRNA downstream 118212 4552871 ~ 4559694 (-) True dpm2
TU234038 lncRNA downstream 168823 4508239 ~ 4509083 (-) True G172787
TU234039 lncRNA downstream 168823 4508337 ~ 4509083 (-) False G172787
TU234026 lncRNA downstream 203045 4474239 ~ 4474861 (-) True G172777
TU234017 lncRNA downstream 212071 4464827 ~ 4465835 (-) True G172768
TU234188 lncRNA upstream 20853 4753166 ~ 4753459 (-) True G172914
TU234189 lncRNA upstream 22140 4754453 ~ 4754782 (-) True G172915
TU234190 lncRNA upstream 24383 4756696 ~ 4757095 (-) True G172916
TU234191 lncRNA upstream 29401 4761714 ~ 4762109 (-) True G172917
TU234211 lncRNA upstream 173575 4905888 ~ 4908580 (-) True G172929
XM_039778827.1 mRNA downstream 65370 4607724 ~ 4612536 (-) True naif1
XM_039780729.1 mRNA downstream 78674 4563357 ~ 4599232 (-) True fam102ab
XM_039780759.1 mRNA downstream 118138 4553246 ~ 4559768 (-) False dpm2
XM_039778751.1 mRNA downstream 135116 4511110 ~ 4542790 (-) True pip5kl1
XM_039780836.1 mRNA downstream 206748 4465940 ~ 4471158 (-) True LOC120546073
XM_039779044.1 mRNA upstream 39436 4771749 ~ 4832171 (-) False sptan1
XM_039779043.1 mRNA upstream 39436 4771749 ~ 4832171 (-) False sptan1
XM_039779042.1 mRNA upstream 39436 4771749 ~ 4832171 (-) False sptan1
XM_039779041.1 mRNA upstream 39436 4771749 ~ 4832171 (-) False sptan1
XM_039779039.1 mRNA upstream 39436 4771749 ~ 4832171 (-) True sptan1
TU233934 other downstream 530151 4141853 ~ 4147755 (-) False cdk9
TU233826 other downstream 734075 3886588 ~ 3943831 (-) True G172620
TU233470 other downstream 1692646 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 3075750 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 3507117 1170203 ~ 1170789 (-) True G171868
TU234194 other upstream 38504 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 117635 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 117635 4849948 ~ 4897357 (-) False odf2a
XR_005636634.1 other upstream 664320 5396633 ~ 5400678 (-) True LOC120545230
XR_005636815.1 other upstream 2088499 6820812 ~ 6820866 (-) True LOC120546140

Expression Profile