RNA id: XM_039779816.1


Basic Information

Item Value
RNA id XM_039779816.1
length 1702
RNA type mRNA
GC content 0.51
exon number 11
gene id traf2b
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 20037864 ~ 20050223 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGCACGAGAGTGGCGTTCAGCAGTGACGTGGATTAGGGTGTaactaacttagctagctaaatacTTGGTGTTGTGTCGGTTGCGTTTATAAGGTGAACAAGCAGACTCTGGGCTATAGCGCCAGATTGATGGAGAAGAATGGCCCGAATCTCGTTGGACTGCACCAACTCTTTACCAGGGATCCCCCTCAGTGTGCTGTCAGTGCCTATGGAGAATAAGTACAAATGTCAGCAGTGTCTCCAGGTCCTGAGGAAGCCTGTCCAGGCTCAGTGCGGCCACCGCTTCTGTGTACACTGCTTCAAGCAGCTCACCAGTTCTGGGCCAAAGCCTTGCGAAGCCTGCCGCCAAGAGGAGATATATGAGGAACCTATTTCCATCCTAAATAGTAATGAGGCATTTCCAGACAATGCAGCCGGCCGAGAAATAGCAAGTCTGCCTGCCAGGTGTTTGAACCAGGGCTGTGATTGGACAGGCTCAATAAAAGAGTATGAGGCTCAACATGAAGGTCGTTGTGAATTTGAGCGGATACAGTGTGAGGCCTGCCAAATCTCAATCCTTCGTACAGACAAGGACAGACATAATGAGAGAGAATGTGAAGCACGAACGCTCAACTGCAAATACTGCAAAATGACCTTCAACTTTAAAGACATCAAGGCCCATGATGAGATCTGTCTGAAGTTCCCCTTACAATGCAAGGACTGTGGCAAGAAAAAAATCCCAAGAGAAAAGTTCAATGACCACAGCAAATCCTGCGCCAAGTCAAAGAGTGCCTGTCCATTCAGTGATGTGGGCTGTAAATCTGTGATAGATAATGGGAAGCTCGCTGACCATGAGCACAGCAGCACCATGGAGCACTTGCGTCTGCTGCTGCCCATGGTGCTGTCCATGGCTAGGACGCGTGCCGATGCTGCTGCTCACGGAGAGTGGCAGGAGGACTCTGGCCTGGGCCTGTACAGGGCTCCTGAGGAGGGGGTCACTATGGGCTCTGGAGCTGCAGCCTCCATGCAGTCTGTGGACGTGGACAAAAAGGTGAACGCTTTAGAAAACATTGTGTGTGTCCTAAACCGAGAGGTGGAGCGCAGTTCGGTTACATTGGAGGCTTTCTCACATCAGCATCGTTTAGACCAGGAAAAAATTGAAAACCTCTCCAACAAAGTGCGTCAGCTAGAGCGGACAGTCACCATGAGAGACTTGCAGCTGTCTGAAACTGAACAGCTGTTGCGAGAGCTCCAGTTCTGCACCTACGACGGGATATTTGTGTGGAAAATCTCTGACTTCTCACGCCGCAGACAGGATGCCGTGGCCGGTCGAACACCTGCAATGTTCTCACCAGCATTTTACTCCAGCAAATATGGCTACAAAATGTGTCTGAGGCTTTATTTGAACGGCGACGGGACGGGCAGAGGAACGCACCTTTCGCTGTTCTTTGTCGTCATGAGGGGAAAGTGCGACGCTCTGCTCAAATGGCCATTCAGTCAGAAGGTGACTCTAATGCTCTTGGATCAGAACAACAGGGAGCACATCATCGATGCTTTCCGCCCCGATGTCACCTCCACCTCCTTTCAGCGGCCGATCAGTGAGATGAACATCGCCAGTGGCTGCCCGCTCTTCTGTCCGCTGGCTAAACTGGCTGGCAAGAGCCCCTATCTGAGAGATGATACCATTTTCATCAAAGCCATCGTAGACCTCACAGGCTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238611 lncRNA upstream 123596 19911836 ~ 19914662 (+) True LOC120545241
TU238598 lncRNA upstream 132135 19883987 ~ 19906123 (+) True G176289
TU238605 lncRNA upstream 145479 19888869 ~ 19892779 (+) True G176292
TU238595 lncRNA upstream 168711 19867818 ~ 19869547 (+) True G176287
TU238594 lncRNA upstream 188353 19849690 ~ 19849905 (+) True G176286
TU238670 lncRNA downstream 7061 20055289 ~ 20061984 (+) True G176346
XR_005636606.1 lncRNA downstream 20532 20068760 ~ 20069830 (+) True LOC120544937
TU238655 lncRNA downstream 31623 20079851 ~ 20087641 (+) True G176335
TU238681 lncRNA downstream 40878 20089106 ~ 20090858 (+) True G176357
TU238769 lncRNA downstream 189299 20237527 ~ 20241216 (+) True G176410
XM_039778837.1 mRNA upstream 9828 20020957 ~ 20028430 (+) True bspry
XM_039779960.1 mRNA upstream 68146 19963771 ~ 19970112 (+) True LOC120545547
XM_039779961.1 mRNA upstream 68146 19963772 ~ 19970112 (+) False LOC120545547
XM_039779962.1 mRNA upstream 68146 19964300 ~ 19970112 (+) False LOC120545547
XM_039778794.1 mRNA upstream 94415 19929571 ~ 19943843 (+) False pax8
XM_039779248.1 mRNA downstream 119699 20167927 ~ 20170745 (+) True bbln
XM_039779813.1 mRNA downstream 133517 20181745 ~ 20236007 (+) True dnm1a
XM_039779990.1 mRNA downstream 214547 20262775 ~ 20266809 (+) True hspa5
XM_039779981.1 mRNA downstream 229059 20277287 ~ 20425401 (+) False rgs3a
XM_039779982.1 mRNA downstream 229060 20277288 ~ 20423458 (+) False rgs3a
unassigned_transcript_963 other upstream 520952 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 650816 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 1314473 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 1351530 18676044 ~ 18686728 (+) False srsf9
TU238926 other downstream 898456 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 2230652 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 2448185 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 2483680 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 2958039 23006267 ~ 23008812 (+) False klhl8

Expression Profile