RNA id: XM_039779846.1


Basic Information

Item Value
RNA id XM_039779846.1
length 5478
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC120545487
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 21513173 ~ 21543255 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGGCGCACGATATGACCGAACACTGCTGACAGTCCATTTGCCGCGTAGACTACAGTAGGACAGTGTACCTACAGTAACCTGGCAGGTCCTACTAAAATGTCTGCGTCTTTAAAAAGAACTATTTGCCGAGTGGTGCATGATGTCAGGCTGCCTGCACTGTTCATGTGAGCAGCGTTCACTTCCTGCAAAGGGATAGAAGcgggcagagagagaaagagagagtgggatagagagatgggggacgagCAGCCAAGATAGGACTGGAGTGATAGAGTGAGCCAGCGGACGAGGGGAAACCGgggcctgctttttttttttttttaacaccccGCAAACTTTATAGGTTGTCCGAAGAGAAAGCCTGCCACATCTGCGCCAGCTGACAGCCGCAGTTTATGGAATAGCGACATATATCGGatgcCTCTCTCAGTGGCAGAGTCTGCAGTAAATATCTGAAACCCCATCTTCCTATTCCTCTGCGGCCAACATGTCCCAGCTGCTCCATGTGGAGATCCCGAACTTTGGAGCTACAGTTCTGGGCTCCCTTAATGAGCAGCGCCTGCTGGGACACTACTGCGATGTATCCATCCTGGTCAAAGGTCAGGCTTTCAAAGCCCACCGGGCCGTTTTGGCTGCCAGCAGCCTCTACTTTCGTGACCTCTTCAGCAGCTCCACCAAGAGCCAGTTTGAGTTGCCCTCCTCAGTCACACCTGCTTGCTTTGAGCAGATCCTCACTTTCTGCTATACAGGGAAGCTAACAATGGCAGCTAGTGAACAGCTGGTGGTCATGTACACAGCTGGCTACCTCCAAATTCAGCATATAGTTGAAAGAGGCATGGACCTAATGTTCAAGGCAAACTCACCTCACTGTGACTCGCAAACAGCAGGGTCTTTAGAGGAAACAGGATCCGAGCCACAGAGTCCTTGTAATAATGGTAACGGCCTAGCGGTGGCTGCCCTTTTGGGAACCCCGGGCTGGTCTCCATCCCTACTCATGCCGCAACGTAAGATTAAACTAGAAGGGGGTGACCCAACACCCTTGACAATACCTTTAATGCAAAGCAAGATTTCGTCTTCGGAGTTGGGGAGTCGGCTGGCGAGGGCCGGTTCAGTGTTTTACACGACAGCCGGTGGGACCCCCATCCCCGGTATGCCTCCGTATCACCTTCAAGGGGCCAGTGGGggtggagcaggaggaggatcAGGAGTTGAAAGGTCCAGTCCTGGAGCGTCCAGCCTGCCAACCACTGACAGTCCTACATCCTACCAGAATGAGGATGAGGAGTTTGAGGAAGAGTCCTATGATGGGATCACAGAGGATGCCTACAGTCATCTCTATGGACGTTCTGCTAACCCCTACGGAATCCAGGACAAGCCAGAGATGGCAGCGATGCCCTTGGCCTTGGAGAGCCGCAACTGTGTGCTGATCCGCAGGGACCTGGTGGCGCTGCCTGCAAGCCTCATCAGCCAGATAGGCTACCGCTGCCACCCTAAGCTCTACACTGAGGGGGACCCTGGGGAGAAGCTGGAATTGGTAGCTGgtacaCAGGTGTTCATGACCCGAGGACAGCTGATGAATTGTCATCTATGTGCTGGTATCAAACACAAAGTCTTGCTTCGCCGTCTGCTAGCCACGTTCTTTGATAGAAACACTTTAGCCAATAGCTGCGGGACAGGTATCCGTTCTTCTACTAGTGACCCCAGTAGGAAACCCCTGGACAGCAGGGTCCTCAATGCTGTCAAACtCTACTGTCAAAATTTCAACCCTAACTTCAAGGAGAGTGAAATGAATGTGATTGCTGCTGACATGTGCACAAACGCGAGGCGTGTCCGCAAGCGATGGTTGCCCAAGATCAAATCCATGCTGCCTGATGGCATGGAGGTGTACCGTGCAGGAATGGGCATGGGTGCTGCTGTGGGTCTGGGCCTGGCACTGGGTGCCTCTCAACCAGGAGTGCCCCTCCCCTTCGAGCCTGACTTCAAGGCCCTAGAGCAAAGGTTGTATCCAGATCGTAAGAACCCTCTCAGGACTCACCCACCGCTGACAGAGGGTAGCCCTGGGCCTGGGGCAGCTGGGGCAGAGGCTGAAGGTGAAGGAGTAGTCcaggaggaacaggaggaagaggaggatgaatcTGGGTTAGAGGGTGTAGACGCATCACTGAGGGCGCCAACTTTGATCCCAGGAGCCGAGGCAGGCAATAGTGGCGACACGCCGCCTGAGCAGGAAGTGGAAGGTTTTGGACAAGGTCTGAGGGTGAACGGACAGTGAATGTCCCTTTGGGCTGCCTCTCACATTGTGAAATCTGTATAACGCCGCATTTTCTTTTGCTTGCTCGCTAACTCTAACATCTCGTCTACCactctttcttctcctctgtgCTTCCTCAACAGGAATTTTTCAGCACAAAAAGCTGCGCTCGTAGATCTTACTATACAGGAATTTGTAACACATGCATGTGCACATGTGTGCTTGTGTACACGCATACTTACTGATAGTGGAAGTAGATCACTCATAGTAGCAGTAGACACAGGCATGGCATTAGCACATTAAGAAAATCAACCCTTTCTGCTCCACCCTTTTCTTAGTATATTCAGTATTTACTCAGGACGAAATCACAAAGAATGGATTGCGGCCGCTGATGGCACCATCATTTGCGCATCACTTTCAACCGCGATCTGCCCTGTCTCAAGGTCCGATTCACAAAAGATATTGCGCAAATGATATTACAGCGCAAACATAATAAAGTTTTGCAGCTGAGTGCAATTTGCCTTTTTTGCCTCCGATTGCATTTATTCATGTGGCAAAGTATGAATGTTGCCTTTGCGCCAAGAACACACAGGAACACTTAACTTAGATATGTGCAAATAGCACAGGAGCACTTAGATGCTATATGCTCGGCAGCACAGTTTGGGGTGCATTTCACCCTTTAACGTGTGCTTTTGCGAATTACATAGCTTCTCTCTTTTGTATTAATGCAGGTTTAGTGGCAGCAAAAGCCACGCAATCCCTTTTTTGAATTTTCCCATTAGTATTTTGGCACCTGCAGCAATACTACAAAGGTCTGATAGCAGaacaaatggctgcaatgatgtatcatttgcaaaacaaaagaaaccgCTGCTTTGCTGGTAGTTTATTGAGTGTGGTATAATGGTTTGTAAAATGATTCAGTTTTCTGGAAAAATCTGAAAATACCCCGTGTACCATTGGGGAAAACAGTTCAGCGAAACAAAGCTCTCATAAATAGTCAGCTTATTTTGCTGTATGataaatatgtataaatatatataacaaagaATGTATTATAACTAAAGGTCAAGTAGTGCATTACTGCCATGATACAGAACAATTTTCCTTTCTGTTTAATCATCACATCATTTTTAGGATAAAGACGAGGAAAACTTTTTATGCAAAATCTAAAGACTTCTCAACAATCCTACAAATAATCTATCACATGGAGTTGTGTTTTCATGCATATTTGCCTGTGACAAATTGGATTAAGTTGTCAATGTGATGCCTGTGTCTGCTCCAGACCGCCCCTCCCAACCACACACGCATACAGATtcacacacacgtgcgcacaTTTCTCACCTTATGATACTTGGCCTTTAATAGCTGCACCGATGCATTAAAAATACATTGTCCAAAAGAAATGTAACAATGCTTTTTATCTTTGAAAAAATCCTTTTGAATTACATCATTCTGTCTTTAAGATGCAGAGAGACATGAACAAGAACATGCACTAAAATCCCAGCTTGCATGCATGAATACAAACAATGGATACAGAGAATCattgaaaacaacaacaagccACAAACCTGCATCTAAATAAGAAAACAGCTACTGTTGCCTCGAGATATGCCATTAATGGACTTTTTTCCACTTCTCACTGGGATCTGACATCAGTGTGACACATGTTAGAACTGACCTGGGTGTGACCCAAGATCGACTGCGTTTGACACAGTACCGatcggattttcttttttaactatgGATCGTGCTGTCACCATGAGTAGAGGAGACTGAATATATGGAGAGGTAAGAGGAAGTGCACTACACTGAGTGGTAGAAGAAAGAAGCACTGTTTCACCTTGATGTGGTGGTGTGATTGGCACCAAGACTACGTAGTCCTGCTTCCATCCGGTTTATTTTTCCTGGGGAGGTTGGGGGGGTAAATTATTGAATAAAACTTATAAGAGCAATTTCTGCTGGCTTATTGCATTTGCACTCAAAAAATGTTAACGGGTGGGAAAACTAAGGAGTTTGGCAAAATGTGACCGTACTAAAGACTGAAAATGTCCTCCCCATCCCCCTGATTGTTTATTTGATGGGGAGATTGTGGGTTTGGAAAGAGAAAATTGGTCTTTGTGAAGATAACTGTTTCTAAATTTTGGAAGGGGCGGAGTGAGGCAATGTCAAACAGGGACTTAAACTGTATTTGTCAtactcattttcttttttgatatctgttttcatgctttcTGCCATGCATAGGGACACAGTCCAACAGCATTCCTTTCTTGTTTTGTGCATTGATTTTAAAAGATACACTGttgtacgttttttttttcttctctgtgtCAAAGCACATTTAATCACAAGGTCAGACCACCAAATTTAATGGAGTTATGGCAAAATTAATCAGACTTTTTCCACTGCAAAAATGTATAGCATAAGCTAACAACCaagcaaaaaaatacagtatatgcccCTGATAtatttgatttgtttgtttatgcttCAGTGCTGTGCCATCTTAAAGGTTGTAATCTTGTTTTGGATTCTTTAGGAGAAGCTTTAAGATGGTCCTGCACAAGAAACACAGGGTTATAATTGCACTAggtggtaataataataataataataataataatgacgtTTACAGTatctagttttttttcttttggaagAAATGTGATCCACAATAAAACAAGGCTGTGATGGAATGGCTGATGTGAAGAATGAATGTAAACCGTAGCACTGCTTTGCCGAAGGGTCCAAGCCTTGATTGAATATGGTCAAATATGGTCAAGACTCGCTTTTTTCTCAATTGTAAACTCATACTCATACTTAAAAATGGGCCGCAATATAGCATTAAGTTGACTGTGAGACTGGATAATGTTCAAACCTAAAGCTTTAGTGATTTAGTGATTTTTAAACTGGTCTTCCAAATTTGTAAACACCAGGGAGTATTTCGAAAACTGAGCGAGGTTCAAGTACAGGCTTTTATAACTCTATTGTTTATTCTATTTTTATCCCAACGAGCTCCTCATTTTTTAGATATTTGGATAGTTATGTGTGTCTctaatgttgaaatgacatataTGTGTTCACAAAACGGAGagatcgtgacattttctgtgtAGACTTCAAGATTTCGCAAATTCTTTCTTTATCTcacttttaatttattaaaattcAGTTCCTGATGTTGCTCttgtaagaaaaataaagatattCAGTTGTTTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238978 lncRNA upstream 102714 21401914 ~ 21410459 (+) True G176565
TU238962 lncRNA upstream 114170 21397647 ~ 21399003 (+) True G176559
TU238944 lncRNA upstream 358318 21151267 ~ 21154855 (+) True G176542
TU238899 lncRNA upstream 575881 20936806 ~ 20937292 (+) True G176507
TU238872 lncRNA upstream 895455 20616036 ~ 20617718 (+) False pappaa
TU239103 lncRNA downstream 111948 21655203 ~ 21655587 (+) True G176644
TU239168 lncRNA downstream 420841 21964096 ~ 21964825 (+) True G176696
TU239176 lncRNA downstream 427893 21971148 ~ 21971498 (+) True G176702
TU239177 lncRNA downstream 428383 21971638 ~ 21971985 (+) True G176703
TU239178 lncRNA downstream 428854 21972109 ~ 21972443 (+) True G176704
XM_039778726.1 mRNA upstream 3542 21507480 ~ 21509631 (+) True LOC120544873
XM_039778727.1 mRNA upstream 3542 21507480 ~ 21509631 (+) False LOC120544873
XM_039778767.1 mRNA upstream 40235 21461126 ~ 21472938 (+) True lhx3
XM_039780597.1 mRNA downstream 3579 21546834 ~ 21584572 (+) False nup214
XM_039780601.1 mRNA downstream 3579 21546834 ~ 21578763 (+) False nup214
XM_039780595.1 mRNA downstream 3579 21546834 ~ 21578761 (+) True nup214
XM_039780596.1 mRNA downstream 3579 21546834 ~ 21578761 (+) False nup214
XM_039780598.1 mRNA downstream 3579 21546834 ~ 21578761 (+) False nup214
TU238926 other upstream 566118 20946684 ~ 20947055 (+) True G176526
unassigned_transcript_963 other upstream 1995867 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 2125731 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 2789388 18676044 ~ 18723785 (+) True srsf9
TU239244 other downstream 735625 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 953158 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 988653 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 1463012 23006267 ~ 23008812 (+) False klhl8
TU239701 other downstream 1639418 23182673 ~ 23184262 (+) True G177094

Expression Profile