RNA id: XM_039779875.1


Basic Information

Item Value
RNA id XM_039779875.1
length 6008
RNA type mRNA
GC content 0.45
exon number 28
gene id vav2
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 10913714 ~ 11140925 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACATTCTTGGAGTAGGCAGTGGAGCCACTTTAACGAAAAGTGTGGACTATTCAGGTTTTACCTTTGCGCGAGATAATCAGCACGTGCGAGCTCGCTCAACCCCCCCCCTGAGTCAACACCGCGCGAGCAGCCCTGGAAGCTTTCTCCTCACGTTTGTGCAGCTCCGGTCTGGTCGGGAGCTGGGACCGCTAAACATCTCCGTCCGAGAGGGAAACGAGGAGAGGGAgacgcgagagagagagagagcgagaggacatgAGCGGAAGGGAGGCAGAAATCACAGACGAGCCAAGCGGTACACACGCGCAACGCTATTTGGGCGTGCAGTAAGGCGCCAAACAAAGTAACATTTACCCGGATAAATGTAAACACTAATATTTCTGGACGTGTTTCCGCTGCTCGGAGAGCGTTAGACTGTGTTGTGGCAAGAGGGTGATTCCCCCCGGCGTTGTGGAAAGACTGCCCTGTGtattatctctttttttctttattgtttgCTGTGGAAATTTCGggaagtttttgtttttgacgTTTAACTTCCGAAGAAAACGGTAAATGCAAATTGCGGTAGGTGACTCCCGGCCGCTTGCTTCAACAACTACACAGACTTGAAAcgtcgttttttttctttttttcccttctctcCCCACATTGTAGGTTAGTAGGCTGTGCTGTTTGGTTCACTGAAATGTGAGACACCAGTGAAGTCGATACATTACAAACTGCTGCATCCAGCTGTTTCGTTAGCCACTGCTGTAACCCCTTCATTCACgcctcttttttttggggggggattgGATATGCGAAGCAAACTTTTTAAGAATGAAGAGAAGAAAATTCCCATAGGACGTCTCTGTTGTCTGGTTCCATCGCCGCCGTCCGCTGAACTGGATCTGTGTTGTTATTATTGGAGTCTTTTCCAAGCCTTCATTTCCATGTTGTGGAGACAGGAGAAATGACATGCGTCTGGCATGGGCATATAGTGCGCTAACATACAGTTGCGAAATTGCCTGATTTATCGAGCTGATAAGTGAATGATTTAAGACATCCAGTGCGGGTATAGGGAACCGACAGTAGTGCCTGCTTGTGCGCCGTGAACCGCCGCTTTCAGCCCGCTGTGAGCCACTTCGAGGACTCGGTTACTTTGTGTGGAGAGTCTCCGGAGCCTATATGGAGGAGTGGAGACAATGCGGCCGGTGGTTGATAGACTGCAAGGTCCTGCCCCCGAACCACCGGGTCGTGTGGCCCTCGGCGGCCGTCTTCGACTTGGCACAGGCCCTTCGAGACGGGGTGCTCTTGTGCCAGATGTTGCACAACCTCTCGCCGGGATCAGTGGACCTGAAGGAGATAAATTTCAGACCCCAGATGTCACAGTTCCTGTGTTTGAAGAACATCCGTACATTTCTCAAGGTGTGCCACGACAAGTTTGGCCTGCGCAACAGCGAGCTGTTTGACCCGTTTGATCTCTTCGATGTCAGGGACTTCGGCAAGGTAATCTCCTCTCTGTCAAGGATCTCCCACCACAGCATCGCACAAATCAAAGGCATCAGgcCCTTTCCATCAGAGGACACAGCTCTGAATGAGGATGATGTGTACCGGAGCCTTGAGGAGCTGGCAGATGAGCATGACTTGGGTGAGGATGACATCTACGACTGTGTGCCGTGTGAGGACGATGGCGATGACATCTATGAGGACATCATTAAGGTGGAAGTACGACAACCCATGAAAATGGGTATGACAGAAGATGACAAGAGGAATTGCTGCTTAGTGGAGATCCAGGAGACTGAAGCAAAGTACTACAAGACTTTAGAGGACATTGAGAAGAATTACATGATCCCGTTGAAGCAAGTCTTGAGTCCACAGGACATGGAGGCTATCTTTGTCAATCTTGAGGATGTAATCAAAGTCCACTTTGCCCTCCTGCGAGCCATCGACCTGAACATGGTCACTGGAGGAAACGGCCTGGGGAAGATCTTCCTCGACTTCAAGGAAAGGTTGTTGATCTATGGTCAGTACTGCAGCCACATGGAGAACGCCCAGAAGACACTGGATGAGCTAATAGCAACACGAGAGGACGTCAAGATTAAAGTGGAGGAATGTACTATGAAAGTGCAGGAAGGGAAGTTCAAGCTGCAGGATCTTCTGGTGGTTCCTATGCAGAGGGTGCTGAAGTATCACCTACTACTGAAGGAACTATTGAGTCACTCAGCGGACCGACCAGAGAGACAACAACTCAAGGAGGCTCTGGAGGCTATGCAGGACCTGGCCATGTACATCAACGAAGTCAAGAGGGACAATGAGACACTGAAGAAAATCAGCGAATTCCAAAGTTCAATAGAAAATCTTCAGGTGAAACTGGAGGAGTACGGGAGGCCAAAGATAGACGGAGAGCTGAAGGTGTGCTCCATCGTCAACCGAACAAAACAGGACCGGTATATATTCCTGTTTGATAAAGTGGTCATTGTCTGCAAGAGGAAAGGCTATAGCTATGAACTCAAAGAGATTATTGAGCTGCAGTCATATAAAATGTCGGATGACCCCATGAACAACAGGGACATGAAAAAGTGGTCGTACGGTTTCTACCTGATCCACCTGCAAGGGAAGCAGGGCTTCCAGTTCTTTTGTAAAACTGAGGAGACAAAGAGGAAGTGGATGGAGCAGTTTGAAATGGCCATGTCCAACATCAAGCCAGAGAGAGCCACAGCCAATCAGCATAACTTCCAAATGCACACATTTGATAAGAACACCAACTGTCGAGCCTGCAAGATGCTTTTAAGGGGCATCTTCTATCAGGGCTACTACTGCTCTCGCTGTGGAACAGGAGCACACAAAGAGTGTCTGGAAGTCATCACCATCTGTAAAATCAATCCTCTTGACTTGGAACCTGGAATGTCATCAGGTCCCAAGATGGTGGCAGTGAGGAACTACCATGGCACACCAGCACCTGTGGGGAAGACACCGCTCTGTTTTCAGACAGGAGATTTTATCGAGTTGCTGAAGGGAGATCCTGACACCACATGGTGGGAGGGAAAGCTgatacaaacacaaaagagTGGCTTCTTCCCCAGTTCATGTGTAAAACCTTGTTTGGACCCAAAGCCCTTCCAGAGCCGGCAGTCCTCAAGGGAATCAGACTACTATGGATATCCTTGGTTTGCAGGGAACATGGAGCGCCAGCAGGCAGATAACCTTTTAAAATCCCACAGCAGTGGGACCTACCTTATCAGAGAGAGGACAGCTGAAGCGGAGAGGTTCGCCATCAGCATCAAATTCAATGATGAAGTAAAACACATCAAAGTCATTGAAAAAGACAGCTGGATTCACATCACTGAGGCCAAGAAGTTTGAGAGTCTTTTGGAGCTGGTGGAGTACTATCAGGCCCATTCATTGAAAGAGAGCTTCAAATTGTTAGATACCACATTGCGATATCCCTACAAGTCAAGAGAACGCTCGCTAACACGGGCCAGTACACGCTCACCAGCTACCTGCGCCTCCTACAACTTCTCCTTCCTCAGTCCGCAGGGCCTCAACTTCTCTTCTCAGAGCTCAGCTCCCTTTTGGTCAGTGTTCACTCCACGGGTGGTGAGTACAGCAGTGGCCCGCTATAACTTTGCAGCACGGGACATGAGAGAGCTGTCACTGCGAGAAGGAGACATCGTCAAAATCTACAGCAAGATCGGTGGAGACCAGGGCTGGTGGAAAGGAGAGGCCAACGGACGAATTGGATGGTTTCCCTCAACGTACGTGGATGAAGAAGGAGTGCAGTAAATCTTGGATGTTTGCTGGCCTGGCTCCTTTTAAATCAGGAACCATCTTCTACTGTTCTCAGAGAAAAATTACTCACTCCTCCAGGAAACTCAcgcaaggaaaaaaaaaagaacttttttgtcgtttttgctGGATACTCATCTTTCAACGACTGCTTCTACCCTATTTCTTTATCCTCAATTATGCATCAGCTTTGCTTCcgtttgtaattttttttttacgtgcaGGATGTCCTGTTTAATTTCTGtacaggaaagaagaaaaaactgtcTTGTTGTCTGTCAGCCTCTGTGTGCTCTGCAGAGGCTTTATTGAACTGAGGACACAGCAGAAACTGACTGTGGATAGCTTTACTTTGAAAAAGGCTCCCCTTTGTTGCAGGTCTATGCGAGGTGAAATAATTGTACAGTATAGATAATTTATTTAATAGAGATTAATATCATTACTAATGATTATTGTGGGGAAGTTGattttagcagcagcagcacggaaTCAGAcgagaaaaactaaaataagaaagaaacaaaaaaagacagatgCTCTGTTTTAATGTTGAGAGATTTTGCCTTAGTTGTCATGGTGATGCCTTGTGGGCTGATGCCAGTGGAGGGAATCAACTTTGTTGACTGGTTTTACTTCTCCATGTATGCATGTGCACATGTGCggcccacacaaacacacacacagaccaatgTACAGTACGGTGCCTTTGAAGAATGGTCGTTGCTTACTGAACCTCAACATCAGCCAGTAAAGAACATTGCCATCCCCAAAAGACAGTTTGTTCCACATCCAGAGGACTTTACTAACAGAGGGGAGAGGCACTTATACTAAATACTGGGGGATGGCTCGCCTTCTGAGCCCTGGAAAACAAGATGGTGAAGCATTTAACTTATCCGAACTGGTGACTAGATGGACTCACAGAGACAGTcggagggtttttttttttagccagcAACAATCACATACACTGTTCACAACAGTCTTGGCGTCACAAGTCAATGGGTGCAATCAGCTGGATGCAAAAGGGAAACATCAAGattatttttaaagttttgaGAACTGGACCATTTATTGTTTGAAGCCAAATTCAGCCATGTTTTAATGTCTGCATGGAGTTTGTTCAATTGTTATGATTTTTGTACTTTGCCTTATTTTTACAGATGATCAGGTGAcgggatttttttcccccttaatGTTATTAATTTTCCGTGTGTGAAATTTGGTGCTGTGCAGACTGGTGAAATTAAACAGTGTCAAAAGATTTTTAATCTGAAGGAAAATGTACGTGCTAATTAACATAAATCCATAGAAGGATCCCTTATTAttcattttgtgattttctaGGGGTGCGGTGCTCAGTGTTTCCATTTAATTCCAGTAATTTCCTAATGCAAAAAATACAGATGTACAGCTATTTAGACCACAGTGTGTTGGCAAAACGCTTTCGTCAGTTTTCTATTGAAAGCATAGATGTACCAGACGACTTTCCCGTTCTAGATTTACAGATATTCAGATGTTTATTGACCCTGTCAGCTCAGTTTTCTTTAAAGGGTTCATCCAAATTTGGTTTACATTTAAttccatatacagtatctaaCTCTGTTTATATGACCTTCATACTTTTCACCAACACATTTTGCTAGATTAGTTTGAATGTATGGTGAAGAGAGATGATGATAAATGCTTGCAGTTTGAAAGTTTAAAAATGTCACAGGACACACAAAGGAAGACAACAAGAAATGCAATGGGAAATTATGGaaagtttttttataaaatgttttcatgctacaacatatattaatataaaagaCAATTTGAAATAACTCACAAAGCAGTCCCACAGCCCACTGAGAAGTAAAGTGCAAACACTGAGCACGTCAGCTCTGGCTGGTTCACAAAGACTGCAGAGCAGAAGATGCTGATATGTTTAGTTTCTAAACTTTTGACTGTCTATGATGTGTGTTATTGCATAGGCTGACCGCCCCGAAAAACACAAAGTCCTACCACTGTGTGAGGGGGACACACAGGAGGCCTCCATGTTGTCTAgaataaggggggggggggatctagTCGCTGTTTATGTAGTGGAAAATCCCATTGCATGTGGCTATTGATATTTCAACTCCTGTCAATACTTCCTCGAAAAAATAAGTACTTAATCGTGTACATTTTTTTGAATGGTTGAGTTTTCCAAATAAGGTctatcatgaaataaataattctCTTTGGTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU235856 lncRNA downstream 365743 10516654 ~ 10547971 (-) True G174246
TU235854 lncRNA downstream 400078 10510586 ~ 10513636 (-) True G174245
TU235837 lncRNA downstream 409138 10502977 ~ 10504576 (-) True G174233
TU235814 lncRNA downstream 534086 10378956 ~ 10379628 (-) False adra1ab
TU235813 lncRNA downstream 534861 10378594 ~ 10378853 (-) True G174210
TU235937 lncRNA upstream 36588 11177513 ~ 11179509 (-) True G174309
TU235959 lncRNA upstream 480522 11621447 ~ 11621660 (-) True G174324
TU235960 lncRNA upstream 518511 11659436 ~ 11659824 (-) True G174325
TU235962 lncRNA upstream 519600 11660525 ~ 11660862 (-) True G174327
TU235970 lncRNA upstream 605146 11746071 ~ 11746420 (-) True G174335
XM_039780667.1 mRNA downstream 88986 10772857 ~ 10824728 (-) True si:ch211-127i16.2
XM_039778871.1 mRNA downstream 517970 10379095 ~ 10395744 (-) True adra1ab
XM_039779917.1 mRNA downstream 687333 10201066 ~ 10226381 (-) False gsna
XM_039779918.1 mRNA downstream 687335 10201066 ~ 10226379 (-) True gsna
XM_039779364.1 mRNA downstream 763711 10143070 ~ 10150003 (-) True barhl1b
XM_039778984.1 mRNA upstream 12842 11153767 ~ 11164494 (-) False LOC120545042
XM_039778985.1 mRNA upstream 12842 11153767 ~ 11164494 (-) False LOC120545042
XM_039778987.1 mRNA upstream 12842 11153767 ~ 11164284 (-) False LOC120545042
XM_039778986.1 mRNA upstream 12842 11153767 ~ 11164283 (-) False LOC120545042
XM_039778983.1 mRNA upstream 12842 11153767 ~ 11164283 (-) True LOC120545042
TU235744 other downstream 805431 10097376 ~ 10108283 (-) False gtf3c4
TU235686 other downstream 1039369 9861001 ~ 9874345 (-) False grin1a
TU235701 other downstream 1070215 9842812 ~ 9843499 (-) True G174120
TU235399 other downstream 1842506 9070162 ~ 9071208 (-) True G173900
TU235313 other downstream 2279815 8625482 ~ 8633899 (-) False LOC120545754
TU235941 other upstream 20315 11161240 ~ 11164355 (-) False LOC120545042
TU236123 other upstream 1216003 12356928 ~ 12357890 (-) True G174439
TU236126 other upstream 1249630 12390555 ~ 12391484 (-) True G174442
TU236617 other upstream 3339537 14480462 ~ 14483417 (-) True G174799
TU236652 other upstream 3443774 14584699 ~ 14589020 (-) False G174827

Expression Profile