RNA id: XM_039779891.1


Basic Information

Item Value
RNA id XM_039779891.1
length 4019
RNA type mRNA
GC content 0.46
exon number 8
gene id si:dkey-247m21.3
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 14359516 ~ 14423313 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGATCATACTCTACTCCCCGAGTCCGcggcagtttttcttttcttttcctctcttctttaTGGCTGGAATATGAGAGCCACCAGCACGGTCTGAGGCGCGTGGATCGGAGAGACAGAGACGAGGTGATTCGGTGAAACGCCTGCAGGCACGAAAGAGCGAGTCTCAGCACCTGTGGACTAACGGTATTTGGGCCACTGTACAGAGTTTGACTGGAGGACGCTGTGTGGCCAGAGCATGGGGTGATGAGGACTATCCTCTGCTAACCTCAATGCAGATGACCAGTGATGGCCACAGCATCACCTCGACAtttgttGGATGACCTAATAAACAcaggacaacaacaacaacaggaacAGCAGCAGGAATTGCCGATCTCGCTGGAGGCGATTGTTCTCACCATCTTTCTCTCCATTATTATCATAATGACAGTGTTTGGCAACCTGCTAGTCATGGTGGCACTCTGCAAGGACAGACATCTACGAAGGAAGAAAACTAACTACTTTATTGTGTCGCTGGCGTTTGCTGACTTGCTGGTTGCGTTGTTGGTGATGCCCTTCGCTGCGATCGAGCTGACCACCGGCCAGTGGAGATATGGAGAGATCTTCTGCTTGGTCCGAACGTCTCTGGACGTCCTGTTGACTACAGCGTCCATTCTGCACCTCTGTTGCATTGCGCTGGACAgGTATTACGCTATCTGCTGCCAACCGCTGGTCTACAGACACAAGATGACCCCAGTCAGAGTGGCAGTGATGCTCAGTGGCTGTTGGCTCATCCCCACATTTATCTCCTTCCTACCAATCATGCAAAGCTGGAACGCCATCGGCATTGAAGACATTATTGAAGAGAGGCGAGCCTTGGCAGGAGGCTCCAACGACACAAGCTGTGTGTTTCTGGTCAACCGGCCGTACGCCCTGATCTGCTCTGCGGTGGCCTTCTACGTCCCGTTGGCCCTCATGGTCCTGGCCTACCACCGGATCTACATCACCGCCATGACCCACGTGCGGCAGATCGAGACACTACAGCGGGCCGGCTCCGCTCCTGTCACCGGGACAGCTCCGCTGATCACCCTGAGGCCCTCCACTTCCTCAGATCCATCGGAGACCTATCGCCTTAGGACAACACCGGACTCCTCCTTAGAGCACGCTCCCATAGCGAATAGCCGCATGCGTGTTGAGACTAAGGCGGCAAAGACGCTGGCGATTATAATGGGTTGTTTCTGCCTATGCTGGGCGCCGTTCTTCATCACTAACGTGGTGGACCCCTTCATCCATTACTCAGTGCCCTGGCAGCTGTGGACAGCCTGGCTGTGGCTCGGGTACATTAATTCAGGGTTGAATCCCTTCCTGTATGCCTTTCTGAACCGGGCGTTTCGAAGGGCGTTTCTGGTGATCCTCTGCTGTGGGGATGAGCGGTACGCACGGCAGGGGAGCTGCTCCTATGGACACACCCACAGAGTGTGCTCGGCTGCGTCCGTCAACGGAACGTCTATGGCACTAAGATTGTCCCTTCTGCCAAACCGGAGCTACAGCGACAACGGGCAGACGATACTGGCCAACGAGCAGTACTAGGACTCTCTTGGACAACTATGAGGATGTCCTTGACAGAGCTGTGACATCCTCAGCTGATGGGAGGGACCTTCGACTTAGTTTGGAGACGAAGACTTCATGGCCTCTTTGATTTCAACAGCCTAATGTTAACTGACCTGTTCATGAGAAGGTTGTCTCACCTGGATATTCACTCTTTGATCTAGCATCAACgtgtgacttcttttttttattttaattttttttacacgttTGTTGGTGCTGTTCAGGGTTAGAGGCATCAGACAAGTGCAGACAGTGAGATCTGACTCTTGGGGAACGAATGAGGCTCTCTTCACTGGATACCAGTTGCTGTCCGCATCCACTTTAAGACACAAGTACTTATAcgcatacagggccacgaacaGATCAgacccagcttacatccaggacaggTTCTCGCTCTAAAACGTGAAGAACTGTTCTTCTCAGTCGAACAACTGGATCACAGGAGGTGAAGATCGAGTCAGCGGTCCAGTGCCACAGATCTCCGAAAACTCCAGCAGACTACAAGCCAAACTCTGGCTAACGTGAGGGCTGGAGTAAGAGGCCTCTTATGCTTTCAACCTCTATGATGACATTCCATCATAGTTATAGCAGAGCTAACTGCCAGCTGGTCACACAGGTGACTGCAGGTCTCGTTAAATTAAAGTTCAGTTTATTGTACAGAAGTttgtattcttgtcttttaccAGCATCGACAGCACTCTGAAACTGTTGAATGTAATGTCGAAAGTGGACGTTTTTATTCTTACCCTATATTTTATATTCCATTTTGAAAtagctgcaaaaaaaacacgAAAAGGCAGAgggtgtaaaaaataaataaatgacttcaACGCAAGGCAATTTTGTGATGAAATACAGCATCATAAAAATGGTTTGTTGACCATTGTGATGAAACACTTGCCTAAACCTTTCATGGCACATCAAATATTGTTGCACTTACCTCTGTGGGTTGAAAGTTTTGAATGTGTCCACACCTAACAGTGATGTTGTGTTGGTTTGGTAGTGAAGCTCTACATCATTGCAGCAAGGTGGAAAGCTTAATGGCCAGTGTTGAAATCCCTCTTCCTGCAAGGGGCAACATTGAGACatattattgtaaataaataacacatggTTTTAAAGCACTGACAGTGCATATGCATCCAATCAGTCATACTGCCACAAATGTATCACAACAAGTAAAAGCTTGaggaatctaaaaaaaaaaagaagtttggtCTGATTAAACATTTGTGAAATGAGCACAATTTCTTTAAATTTACATATCAGCTCATTAGAATATAGCGCCACCCATGTGAGTAACTCCACCACGACTTGAGAACTACCTTTGCAAAGATGTGCCGTTTGTCTCTcgcaagccaatcagagcagactgggctttttgggaGGGGGGTTAACAGAGACAGGCGATAAAACGGAGCATTTTAGACAGAGGGTGATTACAGTTATATTAAGACAGACAGTTTGAgaaaaagcatgtaaacatgttctaggaCTAGTAGAAATCCCAAATACAAGAATGAacctaaaaaaagaataatatgggacctttaaatgcagaaaatggTAAATAATATGAATATGTTCCTCATTAGACTTGATAAGCATATTCAGGCCAAGGTGAATATTAAGGTCTGATTTCACTCAAATGACGCATTAGAGACTTCGTCCACATGTTGAGTTGGCTGATGGTTGGACTGTGTTTTAAAGTGccattaagtcattttttttaccaCTAGAGATCAATATTCACTCTTGCTAAGCTTTGATTTGGTCTCTATTTTCATTACCAGCCATTTGTTTTGGCTCCGTTTtggctctctctctgcccttttGTGTTGGGCATTAAGCATATTCTCAGCACGTATGAGCTAGTTTGCTTGCATCAGCCtcctacagtaggctacatagGAGGCCTGTGAGAGCCAGGGCtctgaaaaaacaaaataattgaaAAGTGGCCAAAAGCAATTAAATACAGCTAAAATCAGTATGGAGCTTCAGAGTCGGCTGTTTTTCTTAGTGGGGGTGGCAGTACTAGTGACCTGTTCACATTACTCAGAGCCATTTCAGTTAAAAAGGTAAATTAAAAAATGCCTCTCTTACACAGGAGTTAACTCTTCTCCGATGTTTGATGCTCAGTTTACATATCTGAActgcatctgtctctctctgtctgtttatcACAACACGTTCAGGAGATTGACACACAGAGGTGTGATACCATCTCAGCCGCCCACATTCGGTcatcattatttttcatttaaatttctTTATGCATATCCGCCTCAGAAAAGTCTAGCTTCAAAGATGACGAGCTGAATGAATGTCTTGTTACAATGTGACAACTTTTAATAGTTCACTGTGCCCTGTATTTCATCTTTATTGTGCGCAATGGAGATGACGAATAAACAGAGAATTTGA

Function

GO:

id name namespace
GO:0007210 serotonin receptor signaling pathway biological_process
GO:0032098 regulation of appetite biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU236378 lncRNA downstream 198352 14160119 ~ 14161164 (-) True G174644
TU236379 lncRNA downstream 198447 14160072 ~ 14161069 (-) False G174644
TU236363 lncRNA downstream 222340 14135438 ~ 14137176 (-) True G174629
TU236361 lncRNA downstream 224262 14132855 ~ 14135254 (-) True G174627
TU236331 lncRNA downstream 402316 13955268 ~ 13957200 (-) True G174606
TU236657 lncRNA upstream 156267 14579580 ~ 14584620 (-) True G174828
TU236662 lncRNA upstream 212957 14636270 ~ 14639963 (-) True G174832
TU236663 lncRNA upstream 212957 14636270 ~ 14661206 (-) False G174832
TU236684 lncRNA upstream 341970 14765283 ~ 14765483 (-) True G174838
TU236730 lncRNA upstream 566456 14989769 ~ 14989973 (-) True G174869
XM_039778844.1 mRNA downstream 18085 14329227 ~ 14341431 (-) False slc26a1
XM_039778845.1 mRNA downstream 19400 14329227 ~ 14340116 (-) True slc26a1
XM_039778841.1 mRNA downstream 42393 14301598 ~ 14317123 (-) False antxr2b
XM_039778840.1 mRNA downstream 42395 14301598 ~ 14317121 (-) True antxr2b
XM_039779786.1 mRNA downstream 118340 14239204 ~ 14241176 (-) False LOC120545458
XM_039779904.1 mRNA upstream 68817 14492130 ~ 14574024 (-) True tnksa
XM_039779905.1 mRNA upstream 69423 14492736 ~ 14574024 (-) False tnksa
XM_039780594.1 mRNA upstream 168975 14592288 ~ 14624902 (-) False si:dkey-88l16.3
XM_039780593.1 mRNA upstream 168975 14592288 ~ 14624902 (-) True si:dkey-88l16.3
XM_039778806.1 mRNA upstream 208659 14631972 ~ 14635570 (-) True LOC120544925
TU236126 other downstream 1968032 12390555 ~ 12391484 (-) True G174442
TU236123 other downstream 2001626 12356928 ~ 12357890 (-) True G174439
TU235941 other downstream 3195161 11161240 ~ 11164355 (-) False LOC120545042
TU235744 other downstream 4251233 10097376 ~ 10108283 (-) False gtf3c4
TU235686 other downstream 4485171 9861001 ~ 9874345 (-) False grin1a
TU236617 other upstream 57149 14480462 ~ 14483417 (-) True G174799
TU236652 other upstream 161386 14584699 ~ 14589020 (-) False G174827
TU236653 other upstream 161386 14584699 ~ 14589020 (-) True G174827
TU236655 other upstream 161386 14584699 ~ 14589020 (-) False G174827
TU236877 other upstream 1227424 15650737 ~ 15654486 (-) True G175000

Expression Profile