RNA id: XM_039779936.1


Basic Information

Item Value
RNA id XM_039779936.1
length 3223
RNA type mRNA
GC content 0.46
exon number 10
gene id ccni
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 5858973 ~ 5885428 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtcctcctctcttcccccaGCCAGCCCCCTCCTCGGAAGTAGACGCATCCGTCTATATTccgttcttttatttttatatttttgtaaccCCTTTTCCCCACCACGTAGCACTATGGACGCCAAGATGGACGATTAAACCGAAGAACGGGTCCACGATTTCACCCCTATATTTATCCTTGAATTGAGTGGACCGGATGAAATCCCACTGTGTTTTTCTCCGCTTCGCAGGGGAGGTAGCTGTATCCAGTGGGGAGGTAGGCTTAACCAGGGGAAAGAATGAAGTTCTTCGAACCCTGGGGACGCCAGAGGCTGTCTTTTCTTCTGGAAAAGGCCGCCTCTAGGGAAGCCAAGATGTGGAAGGTCTATGTGCCAAAGAAACCCTCCTCACAGGATATAGACATTACCCCTGCCCAGCGGGATGAGGTCGTGCGCTGGTTGACAGAGCTCCACGGCAGGCTGCAGCTGTACCCGGAGACCCTGGTGTTAGCTGTTAGCATCCTGGACCGCTTCCTTGCTTCCATCAAGGCCCGTCCAAAGTACCTGCGCTGCATCGCTATCACCTGCTTCTTCCTGGCTGCTAAGACCTGCGAGGAGGATgagcgTGTGCCCTCCCTGAAAGAGATGGCTGTCTCCAGCAACTGTGGCTGTTCTCCATCAGAGATCCTGAGGATGGAGAGGATCATCCTAGACAAACTGAACTGGGATCTGCACACCGCCACAGCACTGGACTTCCTGCACATCTTTCATGCGATGGTGCTGTCATGTCGTTCTGGGTTTTTGAACTCCATGTTGAGACTGAACCGCTCTCAGCACCTCACTCTGCTCACATGGCGACTCTACAACTGTCTGGCTGACCACACACTCATACAGCTCAGAGGATCCATGCTGGCCTTGGCCCTAATCACCCTGGAGCTGGAGACCTGCTGTCCTGACTGGCTGGCTCTTACCATTGACCTGCTGAGGAAGGCACAGATCGACAGCTCTGAGTTGATTCGGAGTCGAGAGCTGGTGGCTCGTAGTCTTTCCACACTGAGATCTTCCCTGCCTCCAAACACTGTCTACATCTACCAACCCCTTCAGAGCCAAACCACCCTGCAGCCTCCAGACCAGGACCCCAATCGCCCCTGCTGCACACTGGGGCTCATCACTTCCACCACTGAGTCTTCCAGGGACCATGCCCTCGTCACCGCCATCCCTGCCCAGCTACAGACACCAGCTGATGGGGAAGAGGAGAGCCAGCAGCCCTGGAGCACCATCTCCTCCACCAACCGCAGCATCCCAGTTCTGCTCTCTCCACCCAAACACCTCCGCCATCTTAACCACCTGCAGAAGGTCACACTGCGCTGCAAGGCATCCGCCAAGCGCAAGGTGGATGAAATGGAGGTGGATGATTTCTATGATGCCATCAAACGCCTCTACAACGAAGACGTCACCACCTCCGCTGCTGTCCAGGAGGGGGCAACATCTTTGATGGGTGCGATAACAACAAGTGGAGGAGGTGAAGGAGAAGGTCTGGGTGTCTGCAGCGTCCTGTTGTCCCGACAGGAAGGCAGCTCGTCCCCATGCCCGCCACTGCAGCCAGTCAGTGCCTCCTAGAGACCAAACAGAAACCTGTTTACCAAAACCATCTTCCCAGTGACATCATCTTTCACTTGTAAATTAAACTCCTCAATTCAAAATAGTTAAAActatatttagttttttgatCTGTGATATTTAGGCAGTTCTTTTGGCAACATTGATGGGCAACTCCCTCAGCAATAGGCAACCATGAAAGAGAGATTTTATTCAGTGTTCCCATTTGCATAAGAAAGCAATGTAAAAGGCAGCTCCTTGTGAAATGTTGCCCATCAGAGTTGATGGAGAAAATAcagtaaaagaagaaaatattgATCTTATAATACAAATAAAGCAGTGATACAGATGATTTCAGTGGTTAAGATGGTTTTGGTTACAGTGCAAAGGACCCCAGCGTGACCCCCCCCCAGCTGTTCAGCTGTCCTGAGGTCAGTTGCCATCATCCCCTGCAATGGGAAAACAGAGccccaaaaaaatttaaacattcaaaaaaataaaacacgtgCCGCTGCTACTATCTTATTAATTATATTTGTTGAGcacaaatacaataatacaaaaggtttaaaaaaattataaatagaaaagttacctttaaaaaaaaaaaaagcctagaTTTGACTTCTCTACCCCCCCTGTCGCTCTCTGTCCTTTTGTGGAAGATTTCTGTCATGGTTTGTCAACTTATATTTGTTCTTCACATCTTAAACTCTTCTTCCATTTcatatattcatgtttttattctgtCTTCTTCCCTTTCCTTCCTCACTCTGCATGTTTTCATCTCTAGAATGTCTACATAGTCTCAATGTATGGATGATTATCTGTATTACTCACAGAGATAGAAAaccttgttttttatttttaaagtgaaGTGCAGTCTGATTGTTAATAAGATGCTAATATAAATATCCCTCCTATGAAGCCCCTCTGTTTTTCCCTCCCCTCAGCTTGTTGTGACGGCTTGACTGAATGAACGTTTCTCGGGTTGTTTTATTCACcctcaaactaaaaaaaaaagtttctttgAAGCTGCTGCTTAAATCTGGCTTTCTCATTTGAGTGTCTTGGCAGACATACAACTGTTTGTTTTGGGCTCCATTGAGTGTGGCGACACCAGGAGATCTTGATTATTTCCTTATAACGTACATGCTCCTATCTAAAACATGTAAAAGGTCTTGGTCAACTCGTTGCTATGACAATAGCCCTAGTGGAATTCTAACGGAAACATCCAGGCTTTACAAACTTTGTTGTCCTTGTACGAAGAACAAAGGCCCTGGTAAAAATCACTCTGCATGTGGTTTCTGTGTTTAAGCACCAAGAGGGATTTCAAGTTCTAGTTTATATATTCATATGTAATAAAACAACCTTGAGttatttaaagcattttaaatAAGCTAAGAGACCGATATGGGTTTTTTGAGTTGGTGTCTCAGCTTACGTAGGAGGCAAGTGACactttgatgttaaaaaaacaaacaaaaaaaacacaaacaacatgctCTGTTTTTATCTCTTGAAGTtctgtttaatatatttttcctgCAAAAAGCTCTGTTTATCCTGCTGTGGGAGCTGCTGGTGGCTTCTTCAGGTCCCTGAATGCACTGGGGCACCAATAAACGAAGAGATACAAGAATGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU234524 lncRNA downstream 9738 5846947 ~ 5849235 (-) True G173192
TU234526 lncRNA downstream 9738 5846947 ~ 5849235 (-) False G173192
TU234523 lncRNA downstream 16095 5839229 ~ 5842878 (-) True G173191
TU234492 lncRNA downstream 177039 5681437 ~ 5681934 (-) True G173165
TU234452 lncRNA downstream 272440 5586096 ~ 5586533 (-) True G173136
TU234569 lncRNA upstream 335 5885763 ~ 5886449 (-) True G173228
TU234572 lncRNA upstream 3847 5889275 ~ 5889745 (-) True G173231
TU234613 lncRNA upstream 185764 6071192 ~ 6074877 (-) True G173263
TU234644 lncRNA upstream 331140 6216568 ~ 6217552 (-) True G173290
XR_005636616.1 lncRNA upstream 334031 6219459 ~ 6221707 (-) True LOC120545015
XM_039778997.1 mRNA downstream 285194 5566039 ~ 5573779 (-) True LOC120545046
XM_039780626.1 mRNA downstream 300997 5532385 ~ 5557976 (-) True LOC120545938
XM_039779410.1 mRNA downstream 458295 5398921 ~ 5400678 (-) False LOC120545230
XM_039779403.1 mRNA downstream 545540 5185444 ~ 5313433 (-) False pam
XM_039780162.1 mRNA upstream 15024 5900452 ~ 5906700 (-) True LOC120545631
XM_039780166.1 mRNA upstream 21931 5907359 ~ 5919472 (-) True LOC120545633
XM_039779249.1 mRNA upstream 412313 6297741 ~ 6322153 (-) True fech
XM_039779250.1 mRNA upstream 442979 6328407 ~ 6347650 (-) True nars1
XM_039779251.1 mRNA upstream 443787 6329215 ~ 6347650 (-) False nars1
XR_005636634.1 other downstream 458295 5396633 ~ 5400678 (-) True LOC120545230
XR_005636624.1 other downstream 961616 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other downstream 961616 4849948 ~ 4897357 (-) False odf2a
TU234194 other downstream 1087670 4770817 ~ 4771303 (-) True G172920
TU233934 other downstream 1711218 4141853 ~ 4147755 (-) False cdk9
XR_005636815.1 other upstream 935384 6820812 ~ 6820866 (-) True LOC120546140
TU234856 other upstream 1267442 7152870 ~ 7160087 (-) True G173470
TU235162 other upstream 2472295 8357723 ~ 8358027 (-) True G173727
TU235313 other upstream 2740054 8625482 ~ 8633899 (-) False LOC120545754
TU235399 other upstream 3184734 9070162 ~ 9071208 (-) True G173900

Expression Profile