RNA id: XM_039779961.1


Basic Information

Item Value
RNA id XM_039779961.1
length 3285
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120545547
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 19963771 ~ 19970112 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCGACTGTCTCCTGCTTTTGTTTCTTCCGCACACGGCAGCACAGAGTCGCACAGCCACACACCCACTTTTTTCCAGATACTTTCAACCGTGTACAAACCATCTGGCGAGTTGTCCACAGTTGCAACCGCTCGGTCTAACATGGCCAAGTCGAGTGATCTCAAACTCTTCCTGGAGTCTTCTCTGAATGAGATATTTAAAGCCACAGTAAGCGACATCCTGGACTCAGTGGACCGGACCCTGTCTGAGTACCAGGGCACAATACACAGGATCGAGTCTGAAAACGAGGGCCTGAAGCGGCTGCTGTTTGCACAGAAAAGTACAGAGTCTGCTGCAAAAGatgTTCGTGAACAAGATGCCACTGAAAAGTCTTTCACTTCAGAATGGAACAGTCGTCTCGTCAGCTCCACCCAGGGCTCGTTCAAGATGTCCATATGCAGCAGTGACAAGAAGAGCTTCAGGAGGAAGCAGAAAGACAAGATGAGGGAGAGCATATCCCCTTCCTCCTTTTTACTGCAGACTGATCATATGGTAGAAAGACCATGTATGAACACAGCAGAGGTAGGTGTGTCAACCCCAAACTTGATATCTGTAAAAGCAGAGCCTGGCCTGGATGAAAGCGGTGCTATTGACCTCTCCCAGCCTCCATCCCTTCTCAATCTGACAATGAGGCCAATAAAAAATGAGAGCACAGAGGTCAGTTTTGACAGTCACGATGCATATGCGCCACTGCCGCCATCTACAGGCCTCAAACAAGAATCCAGAGGCAGTGACAGTGAAGTTAAAGTCACCATTGTTTCTGACACTTACATGCAGGATGGACAGTTCATtaagacagaggaagaggagcagagtGGCGTGCTGCAGTATGGTGACAATGACATTTTCTCTAAGCAAGAGTTGGACCATGCAATGAGATATTACCCTGAATCAGAAATAGATCCTGAGGCAACGAGCAGACAAGTTGTGGAGCCAGAAGTAATGGTGCAGGAGAAAAACGCTGCTGTTCCCGCAGATGGATTTTTGGAGATCCGTGACAACTTTCTCCGTTGTCCCACCTGTCCCAAAACATTTAGTCGAGCAGCCTCACTCAACATCCACATCAAGACACACAGCGCTGAAAAGGCGCACAGCTGCAGCTACTGTGGCAAACGCTTTGGCCGGGCCGATCTCCTCAAATCCCACAAGCGTACCCACACAGGAGAAAGACCCTATAGTTGCAACGTCTGCAGTAAAACATACGCCCATCCCAGTCAGCTCAGGATACACAAACGTGTCCACACGGGAGAGAAGCCGTATTCCTGCTCGCACTGTGGGAAGCGCTTCAACGAGCACAACCAGCTCAAAGTCCACTTGCGGACACACACCGGGGAGAGGCCTTACAGCTGCCAGGAGTGCGGCAAAACTTTCAGCAATGCAGGCAACCTGCGTATACACGAGAGGATCCACACCGGTGAGAAGCCCTACTGCTGCGCTCAGTGCGGGAAACGGTTCAACGGCTTGGGTGACCTCAAAACACACTACAggattcacactggagagaggcCCTACAGCTGTGAGCTGTGTAAGAAGACCTTCAGCCAAGCGGGCCACCTCACCATACACATGCGGATGCACACGGGAGAAAGGCCGTACAGCTGCAACGAGTGCGGCAAGAAGTTCACGGTGGCCAGCAGCCTGAAACTGCACCAGAGGACTCACACCGGAGAGAAGGAGTACAGCTGCTCGTACTGCAGCAAGAGCTTCAGCAGGTCGGGTCACCTGAAGAGACACGAACTGGTGCACACCAAAGAGAAGGTCTTCCTCTGCAGCCAGTGTGGAAAGACCTACACTGACCAATCCTCCCTTAAAAAGCACCTGAAGATGCACGCCGCCAAGGAGCAGAAGGCTCAGAGCGAGGGAAGCACCAGCGAGGCGGAAACAAACCGCCCTTCAGCTTCGGAGACACTTTCAGAAATTAGAAGCCAAGTCTTAGAAGATGAGTAATATAAAAGCTGAGAATGAGTGCTGTATGTGATTTTACTAAATAATCTTAAATCAAGATCAACTGACTAGCTTTTTCAGAATCACATCTCACAGCCTACATAAGCAGGTATTACAGCTATAACTGTTGTGCAGTATTTTGGTGTCTAATAGTAATAAGCATTTAAATGCTTTGTATTAGTCTGTTAATCAAATTGGACTTCCTGGATCGTATTTTATCGCTTCTTTGGTAACTTAAACAAAACGCCACCACCAATCCAGCCCCCTGCACTGTTTTAATGCAGGGCTGTTGTGTGCTGtggttgaaagctccagaaaaagCTGTTAATCAGAGCTTGAGTTTAGATTATTATTGTCTTAACTGCTGTTCCTGAGTTCAAAACTGTAGTTGTCGTTGTGGTACAGTGCAATACACTGTTGTCTAGTCTTTGCTGTGATTTAGTAGTTCCATGACtgattgattattttttatcttgATTGATAAACTCTAATATTCATCTTGTCTTCTTTCTTGCAGCAGTGTAAAGAGACAGATAATgaacatttcattaaaagaaCAGTTGTTCTTTTAAACATGCTGTATGTTACCAAAATGTTGGTATTTTTGAAATGCTTTAAAGGAGGAGTTCAATGCAATGTCTGTCAGATTGTCAGGATGATTTCAACCGACCTGCTGAAGCAAGACACTGAAATCCAGGTTCAGGTTTCTCTTCTGTTGTCCTGACTTTTGACCTCCTTGAAAATAAAATTTCCCCACAGGGGTTAGtataacaacaataacataAAAACAGCAACATAAGTGTTTTAGAATTAAGATATTATGATGCTCATGTATACATGTCGTAGTAGTCAGAGGGTTAGAAATGTGTGCTGCACCAGTGACTTAAAGTGAAGATCATTCATATATTGCTGTATATAGCTTTAACTATACAGTCAGCAATCCATTAAACTGACACGAATGTATTTGTCTAGTAATGTTACTGAAAATAATGTTCCTGCAAATAATCTGTCTCGATTGAATAGTAAATAATTGTTTTGCTGATCTCAGAGAATGTGGAGCTTCTAGAGGATCCGTTTTAGGTCGTTCACTGTTGGAAACGCGTCTCTTACCATGAAATATGTACAACTAACACACAGGAGCAAAATGTCATGTTTATGATGAAAGAGCTACTGTTTTGTGTGGCAACTGGTTGGTATACCTGCACAGCAGTGTATATTAAACTGAGTGTTTGCTACTAGGACTTTATTGTGACTTACTTTTGTGTGGTTTGCGTCTAAATTAAAGAGAAAAGTTAACCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238611 lncRNA upstream 49110 19911836 ~ 19914662 (+) True LOC120545241
TU238598 lncRNA upstream 57649 19883987 ~ 19906123 (+) True G176289
TU238605 lncRNA upstream 70993 19888869 ~ 19892779 (+) True G176292
TU238595 lncRNA upstream 94225 19867818 ~ 19869547 (+) True G176287
TU238594 lncRNA upstream 113867 19849690 ~ 19849905 (+) True G176286
TU238670 lncRNA downstream 85177 20055289 ~ 20061984 (+) True G176346
XR_005636606.1 lncRNA downstream 98648 20068760 ~ 20069830 (+) True LOC120544937
TU238655 lncRNA downstream 109739 20079851 ~ 20087641 (+) True G176335
TU238681 lncRNA downstream 118994 20089106 ~ 20090858 (+) True G176357
TU238769 lncRNA downstream 267415 20237527 ~ 20241216 (+) True G176410
XM_039778791.1 mRNA upstream 19929 19929571 ~ 19943843 (+) True pax8
XM_039778837.1 mRNA downstream 50845 20020957 ~ 20028430 (+) True bspry
XM_039779815.1 mRNA downstream 67752 20037864 ~ 20048228 (+) False traf2b
XM_039779816.1 mRNA downstream 68146 20038258 ~ 20048228 (+) False traf2b
XM_039779817.1 mRNA downstream 71691 20041803 ~ 20050223 (+) True traf2b
XM_039779248.1 mRNA downstream 197815 20167927 ~ 20170745 (+) True bbln
unassigned_transcript_963 other upstream 446466 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 576330 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 1239987 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 1277044 18676044 ~ 18686728 (+) False srsf9
TU238926 other downstream 976572 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 2308768 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 2526301 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 2561796 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 3036155 23006267 ~ 23008812 (+) False klhl8

Expression Profile