RNA id: XM_039779989.1


Basic Information

Item Value
RNA id XM_039779989.1
length 2796
RNA type mRNA
GC content 0.43
exon number 5
gene id rgs3a
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 20277287 ~ 20425401 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGCTGCTGGTGGGAAGCAGAGGAGGTCACTGTGCCCTGTTGCCTCGGCCCTGGGTCAGCTCCCTCTCAGCAACCCCTGTAGGCACACGGAGAATGGCGTGATGAAACAGAGGAGTGAGGATTGagtctctcctccttctctgccACATTCGCTCAGTCCCTGCCGAGGAACCTGTCAGGGACACATCTACAGGAAAGACTGTTAGAGATAATAGATTGACAGGCGAGACACTGACACGAAGCGAGGAAAGGGAGCTGACATCTGCCTTTTGGAAAACTTTGGTCCCACCATACCAACATACCTGGCTGAagactaaaatGGCCAAAGACATGAAGAATCGGCTGGCTTTCCTTCGGAGGAGGAATGAATCCCCAGGAAGCAATCCAGCCAGCAAGTTAGACAAATCTATGAAGTCAGTCAAGCCCACCCCAGAGGAAGCACTGAAATGGGGGGACTCACTTGACAAGCTGCTCACACACAAATATGGTCTGGCAGCGTTCAGAGCTTTCCTGCGCACAGAGTTCAGTGAGGAGAATCTGGAATTCTGGCTAGCATGTGAGGAATACAAGAAGATCAAGTCGCAGTCCAAGATGGCCTCAAAAGCCAAGAAAATCTTTGCAGAATACATCGCTATCCAGTCTTGTAAAGAAGTAAATCTGGATTCGTACACCAGAGATCACACTAAGGACAACCTGCAGAATGTGACACGCTCCTGCTTTGAACTAGCGCAGAGGCGGATATACGGGCTGATGGAGAAGGACTCATACCCCCGCTTCCTGCGCTCAGAACTCTACGTGGACTTAATCAACCAAAAAAAGGCCAGCTCCACTCCGACGTCATCTTCGTCATAAGAGACCAGAAAAAGATCAAAGGAGaagatgacgatgatgatgatgagagagaaaaaaacagggtCAGACTTGAAAAAAAATAGTGGGTGGGTGGGATGTGAGGGTCtttgtttgccttttttttacattttctttgtgtATGTCATCCTGTCCACtatgatttttgttgttgttgtggtgtgaGAGGACGCGGCAAAGCTATGGCACTGCAAAGGAATGTAGTTTACACAGTTACCAggtggatggatgaatgaatagactgatgaatggatggatgggtgttCCTAAAAATACAGAAGCCAACATACGAGGGCTGGAGCAGGAGCTGGACGCTTGTCTGAtcactgtctctcttttttgtgGTGTCAGTcttttggttgtgtttttgcCCAGTTGTACTGGAGAAAAGGAGGGGTTGCTCAGAAAACCCTGCAGACATGAAGACAGTCCGGcactgttttgtcacttttttcccttAATTTCCCTTTAAAACTCCCACTTTAAATgccctcctttcctcctccacATTCTCTGTGAAGCCACTTCAAAGCTGTCGGTACGACACAAAgtccttcatgttttttttttatcaggctCCAAACTGTATGacggagggagaaaaaaaacgaaatGTCTGAATGAAAGCTAGCGTTATCGCTCTGTTTCACATGCATCTCTGTAAAACACCTACACTCTCTCAAAGCTTCTATAAACAGCTTTCACCTTATTCAGTTCATCCCAAGACTGTGGAAAGCGCTCAACAGCGACAACGACGGAGACAGCAACGGGCGAAGAACACAAACGTATAAATAACGGATGGACTGGAGCTGCGAAGAAACGAAGAAATGTGTCAATCTCACATTAAAAGACATTCAAAGTCACATTCAAAGCCAGTAATGGAAGAAAAAGACGACTTGCCTTCTGTCTCCAAGGACTGTTTACAACAAGGAATgaaaactgaagaagaaaaaaaaagttctgtgCAGCCAAACGACATTTCCTTTAACATAGTAGCTCATTTTGGACTAATCGAGGAAGCATTCTCAGGACATTGCCATGACAGGTTCCAGCTTGGTTTATCCTGtttttctacacacacactgtttttatatgttttaggGTTCCAACCTGCACTCCCTAGTTCTCCTGAGCAATACACAAGAGGTTGCTTGTTTCATAGTCAGAGGAAAAGATATTGCTTCATGTTGTACAAACGTTTGCCTATTTATTTAGATTAACTTGCTGGATGCTTCTACAGACACCCTCACCTCCTCTAAAGCACTCCGCTTAAAGCTCTCACTTTCCTCTTAACCACCAAACAGGTCCAATGCTGTCCTGAACTTTAAGtgcaatattgttttttattttattattatgtttggtttgttcatttatttggaTAATTTTGAATTTTTATGGTGAAGACGAACGGCTTAAGCTCTGTATTAACTTTATTTGTTAAGAGAAAAAAAGCGTAGAGCTATAAGGTTGATTTACAACGTAAACTTTCACGAACCATAAGTAGTTTAATGAACTTTAAGCAAATGATTCTAACTGTGTTAACCCCCGGCAGCAGGCAGCTGGGGGGCGTTATGGTTGTAAATATAATTCTTTAAGAAAACTATGTGataacacattaaaaacaaacaaaaacaaaacaactcaTAGGTCTCTGCTGGTGAATGTGGGACCCAGCTGTATCTATGTAAATATGAGAGACTCAAAATTATAAGATGACATGCATTGTTTAATAAAGTAGGTGAGCAAGAGCAGGTACAATCTGCTCTTTCCCTGGTCATACACTGCTTGTAAGGAGTTCTGAAATGCATTTTATCATTTTCACTGTTTACATTTCAAAATGCATCTCCTATGATAGCAAGTGAAAACAGTAGAGTACATTTGGTGTCATTGCTAATGATAAATAAACCAACCAACTGATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238769 lncRNA upstream 178836 20237527 ~ 20241216 (+) True G176410
TU238681 lncRNA upstream 329194 20089106 ~ 20090858 (+) True G176357
TU238655 lncRNA upstream 332411 20079851 ~ 20087641 (+) True G176335
XR_005636606.1 lncRNA upstream 350222 20068760 ~ 20069830 (+) True LOC120544937
TU238670 lncRNA upstream 358068 20055289 ~ 20061984 (+) True G176346
XR_005636708.1 lncRNA downstream 11770 20437171 ~ 20440340 (+) False LOC120545553
TU238842 lncRNA downstream 11770 20437171 ~ 20440566 (+) True LOC120545553
XR_005636709.1 lncRNA downstream 11819 20437220 ~ 20440340 (+) False LOC120545553
XR_005636710.1 lncRNA downstream 72421 20497822 ~ 20499685 (+) False LOC120545557
TU238849 lncRNA downstream 72427 20497828 ~ 20499818 (+) True LOC120545557
XM_039779990.1 mRNA upstream 153243 20262775 ~ 20266809 (+) True hspa5
XM_039779813.1 mRNA upstream 184045 20181745 ~ 20236007 (+) True dnm1a
XM_039779248.1 mRNA upstream 249307 20167927 ~ 20170745 (+) True bbln
XM_039779817.1 mRNA upstream 369829 20041803 ~ 20050223 (+) True traf2b
XM_039779816.1 mRNA upstream 371824 20038258 ~ 20048228 (+) False traf2b
XM_039779996.1 mRNA downstream 32955 20458356 ~ 20497767 (+) True znf618
XM_039780001.1 mRNA downstream 32955 20458356 ~ 20497767 (+) False znf618
XM_039780002.1 mRNA downstream 32955 20458356 ~ 20497767 (+) False znf618
XM_039780004.1 mRNA downstream 32955 20458356 ~ 20497767 (+) False znf618
XM_039779997.1 mRNA downstream 32955 20458356 ~ 20497767 (+) False znf618
unassigned_transcript_963 other upstream 902746 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 1032610 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 1696267 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 1733324 18676044 ~ 18686728 (+) False srsf9
TU238926 other downstream 521283 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 1853479 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 2071012 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 2106507 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 2580866 23006267 ~ 23008812 (+) False klhl8

Expression Profile