RNA id: XM_039780005.1


Basic Information

Item Value
RNA id XM_039780005.1
length 4186
RNA type mRNA
GC content 0.46
exon number 14
gene id znf618
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 20458356 ~ 20497767 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaatatacagtatatggataTATACATGCATTTCCTGACTGCAATCTTGTCTGGTGTCTCTTGACCCTGACCCTGCTTCCTGACTGACAAAACAACACGAAGAAACGGCAcagcatttaaaaatgacattttaaaagaaaaacccaGTAGCAGCAGCTTTTCATAAACAATGCCCTGGTTACTCAGGATAATCTACAGACTTCGCTGTTCCTATGTATGCGGGGTATGTGGgaagaaatacaaatattataACTGCTTTCAGACACACGTCAGGGCACACAGAGAATCAGATAGCATGGTTGCAGATGGTCTTCCCCAGACACCCAACATCTTGTCTCCTCACTGTAGCCGCCTTCCCATAGGTGACATCCTAATACCAGATAGCTTCCGTTACTCCTGTGACATCTGTGGCAAGAAATATAAATACTACAGCTGCTTCCAGGAGCACCGTGACCTGCATGCAGTTGATGATCCATATGAACAGGTAGTGTTGCCTGTGGATGGCCTTAAAGAGGAGGAGCCAGTTGAACCCTACCAGAAAATTGGACCaaAAACTGGGAGCTATGTTTGTGAGTTCTGTGGGAAGCAGTACAAGTATTTCAACCCATACCAGGAGCATGTTGCTCTTCACACACCTATGGGCTCTTTTGATTTGAAGACATCACGGGTACAGGAATGTGGTAGCATGGATATGAGTAAATTTGGCCACAGCCAAACCGGTAAGATTAAAAACAGTCCATTCAGGCGGAAACTGGAAGGTGCAATTCAGTCTAGTCTGGTTGACACAAACAGTTCACAGAATTCAAGCGGAACTCCGAGCCCTCTGGTGGCCAGCACCTTCTCTACAACACAGAAACCCTACACTTGTGGTGCCTGTGGCATCCAGTTCCAGTTCTACAACAACCTGCTGGAGCATATGCAGTCCCATGCTGCGGACAATGAGAACCACACCAAAGGGGACTCTCCCAAAACCTCCTCAGCCTCCGGTCCTCAAGAGCAGCTGTGGAGAGGCTCTCAGGCTCCGGCCCATTCCTCAGTTAAACTACAAATCCCGCCTCAAAGTATCTCCCAGAGAAACCACACAGTCAGCCAGAATAACGGACTACCTGAGAAGGAACGACAACAGGTGGCTGAGCGCCTCTTACGGGTAATGTGTTCAGATCTGAGCATGCTAAACGTGCTCAACAGCAAGGACTTCCTGAAGTTGGCACAGACCCTAGTGGATACGGGTGCTCGTCATGGTGCCTACTCCACCCGTGATGCTTTTGGCAACATGAGTGCCTTGGCACTGCGCCAGCTGCCCCGCATGTACaaccaagtcaaagtcaaagtcacATGTGCTCTAGGCTCCAATGCTTCCCTTGGTATCGCTGTCACCTGCCACTCCCAGACATCAGGCCCAGATGCTTGCTATGTTCTAACAGCCTACCAGGTGGAGGGGTCGAGACTGAAGCGCTATGTGCTCGGTGTGAGGGAGGCTGAACTGAGGGAAGGGCCCGAGCAGGTTCACCACTGGGTGCAGAATGTGCTGTCTGAGTTTGTGATGTCAGACATTCGCACAGTGTATGTCTCGGAGCCCAAAGTCTGGGCAGCAGGATTTGCGGGATCGCCACTTGGTGGTGGTGGCCGGAGCAGGATATGCTTGCGATGCGCGGGGTGTTCACTCGGGGCAGTTGTCCAGGCTGTTCTTGGGAAGCGCAGCCTCCAGGCTCGAGGCCTTCATGAGTTGTCTGAGCTTCTCTCAACGTGCCGAGATATTGCCTCCTCCACCACGCTGTCCCTTCGTGAGGAACAGTGCACCAACACATCCACAAGCACAACTGAGGAAGGTACACAGGGCAGCCCTTCACAATGCCCCAACCCTCCTTGCTGGGATCGTATGGCTGAAGCTCTTCTGCAGGTCCATGCCCACTTTGAACAGATTTGTGAGGCTTATGGACGCAGTAAGACCACGGCTCCTCTCCTCCAAGGTCTCAACAAGCATCTGCTAGGTACGCTGGCTTGTCTGCTGGCACCTCTGCGTCTGGCAGCTCTGGAGCTGAGCAGCCAGAGGAGACCAACCTTACAGCAGGTGCTGCCCGTCTACCTACGCTTGGAGAAGTTTTTCACTTCCAAAGCTGGAGAGGCTGGAACCGGCACGGCTAGCAAACTCTGCCACTACTTCCTTGAAGCACTTAAGGAAAATTTCAAGGTTGAACGAGCCCACCAGGTAGCCATGGTCCTGGACCCACAGCTCAAGCTGCGTTCAGTGCCAGCATACCAGCATGAAGATATAATCTCGCGTGCATGCGAAATGGCTGCTGAATCCAGGGATGGAGGTATGACTGGTGGTGGAGGTTCAGGTGGTGAAGAGCGGGACAATGATGGCCCACCAACCCCTAAAATAAGCCGCGTAGAGGGAGGGGGAAACAACGGTGGCACTTTAAGGGGGACCTCCTCATCTTGCACAGTGTCTGGTAATGATGAGAGTCAGAGCCAAGTTAGACAAGAGATTTTTCAATACTTGGCTGAGCCTCTTCTCCAAGGCACACCTGACCTCTTCCAGTACTGGAGCTCAGCAGTGAATGAGAAGTTTCCCAGGCTTGCTCGCTTGGCAATGTGGCTCCTTGCTGTGCCTGCTGTGGGCATACGCAATGAGTGTGCAACTGTGTGCGAGCAGAGCCTGGCTATGAAGAGGAGGCAGCAGGTAACCACTGAGGAGATGAACAAACTAATTTTCCTTCGCTCAAACATGGGCTAGGAGAGAATCTTGACCAACCCTTATCAACCAAACCTTCACCCCCAACCAATGACTGAAGACTAttatttatatactgtaggttTAGAACAACTGTAAACTTAAATGTGTTAAATACTCATCGAGAAAGATATTTACAGGAAACTCACATTGTATAGGTTGCAACACCATAAAACAATATGacttattacatttatatggtCCTTTCATACAAACAGTACTTTACAAACTCCATATAAGAAAGGACTGTTTGTAAAGTACTGTGGACAAAATGTAGGGGTGGAACGGTAACTCAAAAGATTGTCTCGTTTGGTACGCCACCCTCGGTTTGGGATGCACACGTAAGCAGGATCAGTCTTATCATGGCCAGTGACTTGAATTACTCCAGCCTACTGACTAAACTGGTAAAAGGCTGCAATGCTGTTATTCTCACTGACTGGCAACATTTTCAGGTAAAGTCAGCGTTCACTGCTTGGAACGACTGTCACAGACctctgaaaacacacaacagtAAGTAATGTTGCATATAGCTACAGTATTTggggaatgatcattttcatTGGtgtacaacaaaaaaatcaagaGGTGAATCTTCACTGCCATTGCATCTCTGCCGATTAAGTGTACTAGGTTTATTATTTACTATTGCGTATCActgaaaatatttatttcagCATCAGGTCAGGAGCTAAATCATTGCAGCTAATTTGAAGGTTGCTTCAGTGGCCTAAAAATGTAGTTGTGGATCATTGTatgcatttttcattcaaaaggGTAAAACACAGCTGATAAAAACATTAATAGGGATATGATGCTTtccggttgttgttttttgttacaaaaagaaaagtcatccaatggtttgttttctttctaaAATTAACTCAAGAGGCCTTATGCTGCTGGATATGCTGGTCAAAAGGCTAGATTAGCACAGAAGGGCCTATATCATGAAGTTAACTTGAATAAAGTCAAACcttttgttgaatttttttCCGTGCACAGAGAGGACAGAATCCTATTAGAACTTGTTTGCGGTCAGCTTTTACCAACAGGGAATTAAATGCCATTTTGGATAAACCAATATTTTATTATCTTTTAATACCTGATGGTACAACCCAGCTTGTATGTCAGTAAATACACAATAATGACATCTAGAGGCCATTTTGTGTGGCTTGATGATAGTTTCCAGTGCTGGTACTTAAGGAATGTCTCATCAGTCAGCTCTGTGAAAAGAGATGTCAATACACTTCTTTATATTGGAGGTGTTTTACCTGTGCATTTCCCTCAGATAAACAGCAGTAATATTATTAGCCATCAGTTTGGTAAGCTTGTTGGCAAGGATTTAATGCATACTTGCATAAATCCTTGTGTGGATGTTGCCCactgtgtgtatgggtgttgtttattattattattattattatatttgtgtgtgtatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238842 lncRNA upstream 32173 20437171 ~ 20440566 (+) True LOC120545553
XR_005636708.1 lncRNA upstream 32399 20437171 ~ 20440340 (+) False LOC120545553
XR_005636709.1 lncRNA upstream 32399 20437220 ~ 20440340 (+) False LOC120545553
TU238769 lncRNA upstream 231523 20237527 ~ 20241216 (+) True G176410
TU238681 lncRNA upstream 381881 20089106 ~ 20090858 (+) True G176357
XR_005636710.1 lncRNA downstream 55 20497822 ~ 20499685 (+) False LOC120545557
TU238849 lncRNA downstream 61 20497828 ~ 20499818 (+) True LOC120545557
TU238850 lncRNA downstream 98 20497865 ~ 20499818 (+) False LOC120545557
TU238851 lncRNA downstream 160 20497927 ~ 20499818 (+) False LOC120545557
TU238868 lncRNA downstream 2699 20500466 ~ 20501824 (+) False G176477
XM_039779985.1 mRNA upstream 47338 20330155 ~ 20425401 (+) False rgs3a
XM_039780440.1 mRNA downstream 17580 20515347 ~ 20620786 (+) True pappaa
XM_039780441.1 mRNA downstream 17580 20515347 ~ 20620786 (+) False pappaa
XM_039779630.1 mRNA downstream 198285 20696052 ~ 20701783 (+) True trim32
XM_039778767.1 mRNA downstream 963359 21461126 ~ 21472938 (+) True lhx3
XM_039778766.1 mRNA downstream 966582 21464349 ~ 21472938 (+) False lhx3
unassigned_transcript_963 other upstream 955433 19517235 ~ 19517306 (+) True trnac-gca_32
TU238450 other upstream 1085297 19380277 ~ 19387442 (+) False LOC120545529
TU238143 other upstream 1748954 18676044 ~ 18723785 (+) True srsf9
TU238138 other upstream 1786011 18676044 ~ 18686728 (+) False srsf9
TU238926 other downstream 448917 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 1781113 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 1998646 22496413 ~ 22524368 (+) True LOC120545252
TU239380 other downstream 2034141 22531908 ~ 22537337 (+) False G176870
TU239589 other downstream 2508500 23006267 ~ 23008812 (+) False klhl8

Expression Profile