RNA id: XM_039780008.1


Basic Information

Item Value
RNA id XM_039780008.1
length 3461
RNA type mRNA
GC content 0.45
exon number 15
gene id slc38a9
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 1746583 ~ 1794896 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGACCATATTGTATTCATCAATAACAACAAACACAGCTCATCAGGGCGAAATGTACTTTCAACGTAGCATTTCGTCTTCATTCGGACTGTGTTGCCAGTAACAGTTAGCTGTTATTTAGATAGCGTCTTCTGTAGGCCTATATTTAATTTTTGGGATTAAGGTTATAGAGAAGAACAGTATTGCAGCATCCGCCGCCGTGAGTTGACGTCTGGCTCTTTTGAAGTCACGTTCGTCTGACTAGCTGGTGGGAACATTTGCTGACAGAGCAGACCCGAGATGAGCTGAGGACAGGAAGGAGCACTTCACTGCACACTCTGTCAGGTGATGAGAATTGAGAGGCTGTAGCTGAATGTCAGCGGTCATGGAGGACGACAGCCGGCCTCTGCTGAGCTCCGAGCAGACTGGAGAGAGCTACTCCACAGACTCACTGGACTTTAAAGCTAAAAGGCCCTTCCACGTAGAGCCCAGGAATATCGTAGGTGATGACCCGCAGGAGAGAGTCTCTGCAGAAGCCGCCATCCTCAACAGCCGAGTCCATTACTACAGCAGACTGACAGCCTCTTCTGACAGACTGCTAagTCCTCCAAACCATGTGATCCCCCGGCAAGAGGAGATCTACATCTACAGCCCACTGGGGACAGCTTTCAAGGTGACAGGCAGCGACCCCTCCTCTAAAAACCCCAGTATCATCACCATATTTGCTGTATGGAACACAATGATGGGCACATCTATACTCAGCATACCTTGGGGTATAAAGCAGGCTGGTTTCACTCTGGGGatcctcatcctcatcttcACAGGCCTGCTGATGCTCTACTGTTGTTACATCGTTCTCAAATCGCCAAAGGCAATACATATGGACACTTCCGACTGGGAATTCCCTGATGTTTGTAGTTACTACTTTGGCAAGTTTGGCAAGTGGTCCAGCTTGTTCTTCTCGATGGTGTCACTTATTGGAGCCATGGTGGTTTACTGGGTTCTCATGTCCAATTTCCTCTACAACACTGGACAGTTCATCTACAACTATGCTCACAATGTCAACATGTCAGATTCAGAGTTTGGAACCAACGGCTCAGATAGAGTCATCTGTCCATACCCAAACACTGAACCCGGAGGGAACCACACCATCAGCACACTATACATCAGTGGAAATGACACTTCTGATGGCACCTCTTTTGAACACTGGTGGAGCAAAACCAACACCATCCCCCTCTACCTCAtcatcctgctgctgccgctgctctGCTTCCGCTCAGCCGCCTTCTTCGCACGGTTTACTTTCTTGGGCACCATATCAGTGGTCTACCTGATTGTGCTGGTAACGATTAAAGCTGTCCACCTCGGCTTCCACCTAGAGTTCCACTGGTTTGACACAACCGAGATCTATGTTGCAGAGTTCAGACTGCTCTTCCCTCAGTTCACTGGTGTCCTCACGCTGGCCTTCTTCATTCACAACTGCATCGTCACGTTAATGAAGAACAACAAACACCAAGAGAACAATgTGCGGGACCTGTCTGTGGCTTATCTTCTAGTAGGGCTGACCTATCTGTATGTGGGAGTGTTGATCTTTGCTGCCTTTCCCTCACCTGCTCTCTCCAAGGACTGCATTGAGCCGAACTTCTTAGATAACTTCCCCACCAGTGATGTGTTGGTGTTTGTGGCTCGGGCCTTCCTGTTGTTCCAGATGATCACAGTCTACCCCCTGCTGGGATACTTGGTGCGGGTCCAGATGATGGGCCAGATCTTTGGCAATCATTACCCCAGTTTCCTCCACGTTCTGGCACTGAACATCGTAATAGTTGGAGCTGGTGTCCTGATGGCCAAGTTTTATCCCAATATTGGATCCATCATAAGGTTTTCTGGAGCGACATGTGGCTTGGCTCTAGTGTTTGTCTTCCCTGCCTTAGTCCACATGATCTCCCTGAGAAGGCAGGGGCTGCTCCGCTGGCCGTCAGCCATCTTCCACAGTTTCCTGATCCTGTTGGGCATGGCCAACCTGCTGGCTCAGTTCTTCATGTAGAGAAGCAGTCAGACACAGAGTCctaaccaatcagaagcaagaaaaaaaacagatgggATGGAAATTTCACATGGGAATCTCTGAAATTCAATGTAGAATAATGGAGTGCTTAACCGCACAGTGTGTTTTATCCCATGCATGTCATGGCCACAAAAATAACGCCCAGATGAACGTCCGCAGCCTCCAGCTAATCCGATTTATTGTCGGTTTCTATGGTATAAAAAAGAAGATATTAAATATCGCACACTTCCTGTAGTAAGAGTTAGTGTGATTTGTAAAGGTTTATGTTTCAGGAGAATAACAGGAATCCAATGTCTTGGTTTGATTACATTAtctattttttaattttctacATGCAATCCAGCCAAAAGTATTGCTATGATAAAAGCTTTCATTTAGATAATTTCCTACGTGATACTGTTGATTATTCCTGCTTAGACTGATCTCAGACCTGTCCAGCCAAGTTGTATAGACACACTGTAAACTGTGTTGAAACTTATTGATAAGTTGAGCAGCGAGCTGGCACAAACTTTTGGAACATGGGGTCACTTTTGAGCTGTAACACCATCAGGGGAGCATCTTCTTACGCTATTGTATTAGAGGTCTGTTTTTATGTAGATTCAAACAGCATCTCAATCAAACATTAACTCTATAGACATAATCCattctataataataataataataattaatggaTGGATGACACCGTGAGAGGTTCCTAGTGATGAACCGACAGAATTATCAACTGAATCTGCAGCTGCCCTCAGCTTTTCAGAACTTCATGGTGAGTTttagctcttttttttcttttttactctcGCGGCTCTCACAGCGTCTGTTTAGGCCCAGCAGGCAGCTGATTTCAGAGTGCTCAGCACCAAAATGCAGACAGACTGTTAgaaactagctggtgaacaagGTGGAGGATTTGGCAGCCAGACCTTTTTCcgcaggagttggtggagaccaataACAACTAACAAGAGAGTGACTATTGGAATatcattcatcaggtggacagaGACACTGCTCCAAGTGAATGATCAtgttctgtgtctgctggatgtggaaATAAGGAACTTAAAAGGTGATGATGTGTCAACGTTGCATTCACAACttgttattgcaggtttaagttTGTTACACGTGAAGCTTTACGGCTGGATGTTATGATCATATGGAGTTGTGTCGTGCTGACACCAGGGAATCCTATTACTAACTGTGATTATGTTGTATGTTATTGGAGAACAGCCATGTTGTGTGCTTATTTTTTTGGAAGAAACATTTGGtacaatgttttaattttaatgagCAGTGTGCAGATTTACATGTTTGACATGATGCCTATTTTCTAAATACTGtctaatttgttgtattttactaATGATAGGATAGACAAAGGGAATAAGTGCGTGAAAATAAACCATATCAATCTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233173 lncRNA downstream 5153 1741024 ~ 1741430 (-) True G172053
TU233110 lncRNA downstream 188808 1557544 ~ 1557775 (-) True G172000
TU233097 lncRNA downstream 250056 1494835 ~ 1496527 (-) True G171987
TU233096 lncRNA downstream 252266 1493231 ~ 1494317 (-) True G171986
TU233062 lncRNA downstream 288969 1451207 ~ 1457614 (-) False G171959
TU233243 lncRNA upstream 151749 1946644 ~ 1946905 (-) True G172111
TU233287 lncRNA upstream 287913 2082808 ~ 2083242 (-) True G172150
TU233288 lncRNA upstream 294818 2089713 ~ 2089979 (-) True G172151
TU233317 lncRNA upstream 295528 2090423 ~ 2097164 (-) True G172180
TU233382 lncRNA upstream 534790 2329685 ~ 2329970 (-) True G172231
XM_039779782.1 mRNA downstream 30630 1655348 ~ 1715953 (-) True nrg1
XM_039779188.1 mRNA downstream 224109 1506554 ~ 1522474 (-) True reep5
XM_039780306.1 mRNA downstream 323424 1392764 ~ 1423159 (-) False syk
XM_039780855.1 mRNA upstream 8103 1802998 ~ 1813828 (-) True purg
XM_039780857.1 mRNA upstream 25869 1820764 ~ 1863988 (-) False il6st
XM_039780856.1 mRNA upstream 25869 1820764 ~ 1863988 (-) True il6st
XM_039780858.1 mRNA upstream 63151 1858046 ~ 1860861 (-) True LOC120546089
XM_039780683.1 mRNA upstream 92642 1887537 ~ 1943510 (-) True tpm2
TU233144 other downstream 144427 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 575794 1170203 ~ 1170789 (-) True G171868
TU233470 other upstream 1189927 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 2091693 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 2346958 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 2975922 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 3055053 4849948 ~ 4897357 (-) False odf2a

Expression Profile