RNA id: XM_039780021.1


Basic Information

Item Value
RNA id XM_039780021.1
length 3783
RNA type mRNA
GC content 0.47
exon number 20
gene id git2b
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 18704773 ~ 18723257 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGGGGGCGCAAACGAGCACAGTTTGCCTGCTACAATCGGTGAATAGAATCTGCTAGGGCGGGCAGTCCCGTTTTATCTCTGTCTAGCCGTGTTGTAACGTATCTTTCAAATATTTGTCTTTCCTGGAGGATTTCTATCAAGGGATGTCAAAGCGAGTACGAAGCAGAGAGGTCTGCGCTGATTGCAGTGCTCCGGAGCCACGCTGGGCCTCTGTTAACAGGGGTGTGTTGATCTGCGATGAGTGCTGCAGCATCCATCGAGGTCTGGGGCGACACAGCTCTCAAGTCCGACATCTGACACACTGTCCATGGCCACCCTCCCAGATACAGatgGTCCAGACACTGTATGGCAATGGAGCTAATTCCATATGGGAGCATAGCCTCCTGGACCCTTCCTCTTCAGTAAGTGGGAAGCGCAAAGCCAACCCCCAGGACAGAGTTCATCCCAACAAGACAGAGTTCATCAAGGCCAAATATCAGATGTTGGTGTACGTCCATCGGATGCCTTGTCGGGAGGATGACAGTGTAACAGCAAAAGACCTCAGCAAGCAACTCCACTCCAGTGTCCGGACTGGAAACCTGGAGACCTGCCTAAGACTCCTATCTTTGGGAGCACAGGCCAACTTTTTCCATCCAGAGAAAGGAAACACCCCACTACACATAGCAGCAAAAGCAGGACAAATGTTACAAGCAGAACTGTTGGCAGTTTATGGAGCTGATCCAGGGGCTCTGGATTCCAGTGGAAAGACCCCCATCGATTATGCAAGACAAGCTGGGCATCAGGAGCTGGCAGAGAGGCTAGTGGAGATACAGTATGAACTCACTGACCGGTtaacattttacctttgtggaAGAAGACCAGATCACAGAAACGGGCAGCACTTCATCATTCCACAGATGGCAGACAGCAGCCTGGATTTGTCAGAGTTTGCAAAAGCCGCAAAGAAGAAGCTCCAGTCGCTAAGTAACCATCAGTTTGAAGAACTTGCCATGGATGTTTATGATGAAGTTGACAGAAGAGAAACGGATGcagtgtggtTGGCCACTCAGAACCACAGCACACTTGTAACGGACACCACAgttgtgccttttctgccggTCAATCCAGAGTACTCATCTACCAGAAACCAGGGTCGTCAAAAATTGGCAAGGTTTAGTGCTAATGAATTTGCCACCCTGGTTATTGATATTCTAACTGATGCTAAACGACGGCAGTGGGGTAATTCCTGCGACAGTCCCAAAGAGAGTGTAGAGCTGATCCTTCAGGGAATAGACAGTCGCCATAACAGTGAGAGCCAAGACAATGACCAGCCCGATTACGACAGTGTGGCATCCGATGAAGATCCAGTGTTGGAAGCCACCTGTGGTGACAGCTGCAATGATGGAAGGACCAAGAGCTCGGAGTCCTCTGACCTCTCTGATGGACCAATCACAGTACAGGAATTTATGGAGGTGAAGAGCGCCCTAACTGCATCAGAAGCCAAAATACAACAGCTTCTTAAAGTCAACTGTCACCTCAGTGAAGAGCTGCGTAGCATGCAGAGCAAGCTCAACTCCCTGCAGACTGAAAACACAACACTGCGATGGCAAGCCCCCAGCGGACAACAACAGCTCCAGGGGCCCTTTGGTCGACACCCACCCCGCGGAGGTCGCGCCATGTCCATGTATGAGACGGGCTCTTCTCCAAGGCAGTACCCCCACCGGGGGGAAACGGCTCGGCATGAGGATGGAGTCATTTTACAACCCTTTCCAACCAATATTGGGAGGGGTCCTTTGGGGACGGCTGCTTCCTCCCTCCCTACCTTCCCCTCTTCCCTGTCCTGGTCGTGGGATGAGCAATCTCGAAGGGGCTGCAGTCTGGAAGGACAGACTATCATGCTGGAGAATGATTATGACTCTACGCCCAACCACTCTGAACTGGAGGAGACTGGCAGCCCTCTTCCAGCCTCTGAAGCAGTGGAGccaggggaggaggggggggaggatgCCACCCTGCCATGCACAGAGGATGTCATCTGTAAGACAGAGCAGATCACCAAGAACATACAGGAGCTTCTGAGAGCTGCCCAGGAGACCAAACATGaaagCCTTTTTGTCTCCATCTCCCGCAGCTTCCTGCCTTGTTCAGAAAAGATCTGCATGGCCGTGACCGAGATGGCCGCCCTGTTTCCCAAGAGGCCATCCTCGGAGACTGTGCGAGGGTCTCTGTGTCTGCTCACTTCAAGTGCCAGTCGGCTCCATGGAGAGTGCCAGAAGGCCGTAGAGCACAACCCCTGCCCGTCGGACATCCAGCTGGTCACTCAGCAGGTCATCCAGTGCGCCTATGACATTGCCAAAGCTGCCAAGCAACTTGTCACTGTGACaaccaaagaaaacaacaactaaCTAAAACCCAAAGACATTCCTGGTGCACCCAAAATAGTTCATCAATGATGTTGCTAATCAATGatgttgccccccccccccgtattTATCAGTGTAAGCATTCATACATTCCTTTAAAAATGAGATGTACCATGCAAAATTACAGATCAATCAAAACattcattttgttgtttttgtatcaCGGTTATAAAGAGTAAACAAACCTCTTTAAAACTGTAGGACAGAATCTGTTACTATCCCTTACCTCACAAAGAGATAACCGTTTAATCCACACAAAATCCAAAAGTgcaatgttgtgtgtgtatatataaaacgATTAGAATAAGAAGCAGTTGAGCTTTCCACGTTGTAGTTTTCCACGTAGAGGTCATCATTTGTGCTCCTTGAGGTCGGTTGTCTGGCATGGCTGAGCTGCCAGAGGGGACAAAAGTCTGCAAGACACCTGGCATCAAGGATCAGAAGAGATTAACCTCAACCTACACCAGTGTTGTCAGTTTATTTCGCTTTAGCCATTTTAAATGTCTACAGGATGCAATGACAGTATTTTAATCTTGAACCATTGTGATGCCACTTGCTTAGAGTTCAAATGTTTGTTTAGGAAGCAAACCTGTGATTATAAAAGTAGCTTCAGTGCATTCAGCACTATGTAAGGCCAGCAGTACCAAGAGTGTGCAAACCATTCCATCCAGCAGTTCCAGCAGGTGATTCCAGTAACTGTTCAGTTAAGTATCAGTAATTTTTGGAGTTATAATGTTACAgccatacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacagttgtCACAGAGATGGCCTCAATGGCCCATGTGAAATCCATTTTGAATCAAATTTAATAGCATTATGCAAATATATAAGATGTATGTATCCATTTAATTCTTTATCAAAATTAACCCAAATGCTATTCTATTTATAAACTGTATGTCATACCTCTAAGAAAATATCAATGTTTATTTTCATAAGCTTTTGTTTAACACGATTCTCCTCACAGACTAACTTTTGTTCTGAGGTTTGGGACATCTCAGCTGGCAGTAACATGTGGGCACCTTGGGATCTCTGTTTATTCGGTGTGATGCTGTAACTCCAGTGTGTTAGATGCTACTTGTGGTCACATACGTACAGCCATGGCTTACAGTCACTGGTAAAGTAGAAATGTGCCCTCAAAGTTTGGGTACCTGTTGTAGAACTTGGGTCTAATGTGTCACTCATTGTTGTGAGATCAGTTTCAAATGAAAAGTCGGCAAAGGACGTCCTAAATAAGTATTAAAAATATTCAGTACATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU238139 lncRNA upstream 18105 18676044 ~ 18686728 (+) False srsf9
TU238127 lncRNA upstream 30868 18670383 ~ 18673965 (+) True G175925
TU238118 lncRNA upstream 46549 18657690 ~ 18658284 (+) True G175917
TU238116 lncRNA upstream 47216 18656524 ~ 18657617 (+) False LOC120545610
TU238221 lncRNA downstream 112918 18836175 ~ 18836754 (+) True G175974
TU238220 lncRNA downstream 127821 18851078 ~ 18854548 (+) True G175973
TU238449 lncRNA downstream 675913 19399170 ~ 19402367 (+) False LOC120545529
TU238472 lncRNA downstream 765053 19488310 ~ 19492082 (+) True G176173
TU238477 lncRNA downstream 772779 19496036 ~ 19502184 (+) True G176177
XM_039779670.1 mRNA upstream 18109 18676021 ~ 18686724 (+) False srsf9
XM_039779669.1 mRNA upstream 18109 18676032 ~ 18686724 (+) False srsf9
XM_039779671.1 mRNA upstream 18109 18676032 ~ 18686724 (+) False srsf9
XM_039780123.1 mRNA upstream 47214 18656947 ~ 18657619 (+) True LOC120545610
XM_039780121.1 mRNA upstream 53764 18635026 ~ 18651069 (+) True cabp7b
XM_039780031.1 mRNA downstream 628 18723885 ~ 18726384 (+) True LOC120545567
XM_039778926.1 mRNA downstream 28787 18752044 ~ 18772197 (+) True cplane1
XM_039778929.1 mRNA downstream 28787 18752044 ~ 18772197 (+) False cplane1
XM_039778927.1 mRNA downstream 28787 18752044 ~ 18772197 (+) False cplane1
XM_039778928.1 mRNA downstream 28787 18752044 ~ 18772197 (+) False cplane1
TU238138 other upstream 18105 18676044 ~ 18686728 (+) False srsf9
TU238154 other upstream 18105 18676044 ~ 18686728 (+) False srsf9
XR_005636603.1 other upstream 156692 18536631 ~ 18548141 (+) True myo1hb
TU237773 other upstream 627331 18076239 ~ 18077502 (+) False LOC120545364
TU238450 other downstream 657020 19380277 ~ 19387442 (+) False LOC120545529
unassigned_transcript_963 other downstream 793978 19517235 ~ 19517306 (+) True trnac-gca_32
TU238926 other downstream 2223427 20946684 ~ 20947055 (+) True G176526
TU239244 other downstream 3555623 22278880 ~ 22282163 (+) True G176753
TU239368 other downstream 3773156 22496413 ~ 22524368 (+) True LOC120545252