RNA id: XM_039780033.1


Basic Information

Item Value
RNA id XM_039780033.1
length 2005
RNA type mRNA
GC content 0.51
exon number 10
gene id hmgcs1
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 2145367 ~ 2159051 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTTTCGGTCATAGACGACTGAAGTACCAGGAAATCCCGTTGTGCCCTTTCCCCTACTTTTGCTCTCCTCTAAACACAAGCTTTATGTAGCTGTTTAGGATGCCGGGATCAGGACCAATCAGTTGCTTGGGACCGTGGCCCAAAGATGTGGGTATCATTGCCTTGGAACTGTACTTCCCATCCCAGTATGTGGACCAGGCCGAGCTGGAGCAATTAGACGGCGTGACAGCTGGTAAATACACTGTGGGCCTGGGCCAAGCTCGCATGGGCTTCTGCTCCGACCGCGAGGACATCAACTCTCTGTGCCTGACGGTGGTCCAGAGGCTCATGGAGAGGAATGGCCTGTCCTACGACAGTGTGGGTCGACTGGAGGTCGGCACTGAGACCATCATCGACAAGTCTAAATCTGTCAAGACCGTCATCATGCAGCTGTTTGAGGACTCTGGCAATACAGATGTGGAGGGTATTGACACCACAAACGCCTGCTACGGGGGTACAGCTGCACTCTTCAACGCTGTCAACTGGGTGGAGTCCAGCTCATGGGATGGGCGATATGCTTTGGTTGTAGCGGGGGACATTGCTGTCTACGCCACAGGAACTGCCCGGCCTACAGGGGGTGCAGGTGCAGTGGCCATGCTTGTCGGGCCTAATGCTCCTCTGGCCTTTGAACGAGGTCTGCGAGGAACCCACATGCAGCACGCATATGACTTCTACAAGCCAGACCTGATGTCCGAGTATCCTGTGGTGGACGGAAAGCTGTCGATAGAGTGCTACCTGAGTGCCTTGGACCGCTGCTACTCTGTGTACCGGAACAAGATCCATGCGCAGTGGCAAAGAGAGGGTTCAGAAGAGCGTTTCAGCCTGGACGACTTTGGCTTTCTAGTCTTCCATTCTCCCTACTGCAAGCTGGTGCAGAAGTCGTTGGCTAGGCTGATGCTGAATGACTTTCTGAGTCACCCCAGCCCCAACACTGAGACGGGACCCTTCACAGGCCTCGATGCTTTCAGAGATATAAAGCCAGAAGAGACCTACTTTGACCGGGATGTGGAGAAGGCCTTCATGAAGGCCAGTGCAGATCTGTTTGAGATGAAGACCAAGGCCTCCCTGCTGATCTCCAATCAGAATGGAAACATGTACACCCCTTCTGTCTACGGCTGCCTTGCATCACTCATTGCACAACAAACAGCTTCACAGATAGCAGGACAGAGGATTGGAGTCTTCTCCTACGGTTCAGGATTTGCTGCTACTCTGTATTCTCTCAGAGTCACACAGGACCATACACCTGgctCTAGTCTGGACAAACTTGTGTCCAGCCTGAGTGACCTGAAGGTCCGACTGGACTCGAGGCAGAAGGTTTCGCCTGCTGTCTTCTCTGAGAACATGAAGCTGAGAGAGGATACACACCACTTAGCCAACTACGTCCCTCGAGGCTCAGTGGAGGATCTGTTTCCAGGGACGTGGTACCTGACACGAGTGGATGACAAACACCGCAGGGAATATGCACGAAGACCTGTGGACGATGACCTGACAGCAGCGCCAGAACTTGTTCGCTCCAGCACTGCACCAGAGCACATCCCCAGTCCAGTCAAGAAGATGCCTCGCATCCCTGCAGCCACCGCTGGCCCAGACGCCGCCGTCAGCAACTGACCTCACTTACCTCTGAGAGGTATCAAGATCCAACAGTTTGAAAACTGTAATAACTAGACAATACTAGAGGTCAGAAGGCTAGCAAGAGACAACAGTGTCACCTCCAAAATCATTATACATTCAACTTATTTAGGTTGGAGCAGTGTGTCACAAAAGTGTTCAGTGGAGGCCTGTGGACAGATGTAGACACTCCTCAACTGCCAGTACCTTTCCTATCATCCACATGTAATACTGTCAGACAGTAAACTTCCTATTTCTATAGTCTAGAGTCTCTTTTGATCACAATACGTATTTGTTTTAGCaatcttttatttaaatgttaacatttgtacatcttttttttttttttgtatttgg

Function

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0004421 hydroxymethylglutaryl-CoA synthase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233317 lncRNA downstream 51331 2090423 ~ 2097164 (-) True G172180
TU233288 lncRNA downstream 58516 2089713 ~ 2089979 (-) True G172151
TU233287 lncRNA downstream 65253 2082808 ~ 2083242 (-) True G172150
TU233243 lncRNA downstream 201590 1946644 ~ 1946905 (-) True G172111
TU233173 lncRNA downstream 407065 1741024 ~ 1741430 (-) True G172053
TU233382 lncRNA upstream 171324 2329685 ~ 2329970 (-) True G172231
TU233388 lncRNA upstream 183265 2341626 ~ 2342031 (-) True G172235
XR_005636609.1 lncRNA upstream 247414 2405775 ~ 2406868 (-) True LOC120544955
TU233440 lncRNA upstream 491097 2649458 ~ 2729174 (-) False G172283
TU233441 lncRNA upstream 491097 2649458 ~ 2655894 (-) True G172283
XM_039780446.1 mRNA downstream 75389 1948903 ~ 2073106 (-) True tln1
XM_039780683.1 mRNA downstream 204985 1887537 ~ 1943510 (-) True tpm2
XM_039780448.1 mRNA upstream 21127 2179488 ~ 2252955 (-) True LOC120545833
XM_039780463.1 mRNA upstream 95536 2253897 ~ 2279811 (-) True dcp2
XM_039780568.1 mRNA upstream 310814 2469175 ~ 2807464 (-) False dcc
XM_039780567.1 mRNA upstream 310814 2469175 ~ 2807464 (-) False dcc
XM_039780566.1 mRNA upstream 310814 2469175 ~ 2807464 (-) False dcc
TU233144 other downstream 546339 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 977706 1170203 ~ 1170789 (-) True G171868
TU233470 other upstream 826461 2984822 ~ 2985260 (-) True G172311
TU233826 other upstream 1728227 3886588 ~ 3943831 (-) True G172620
TU233934 other upstream 1983492 4141853 ~ 4147755 (-) False cdk9
TU234194 other upstream 2612456 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 2691587 4849948 ~ 4897357 (-) False odf2a

Expression Profile