RNA id: XM_039780050.1


Basic Information

Item Value
RNA id XM_039780050.1
length 1872
RNA type mRNA
GC content 0.52
exon number 9
gene id thnsl2
representative False

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 4307976 ~ 4332155 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctagcggcagcaacattattttgcagccagggtgtaggtctggcttgtcaggctacagtCCTCTGCCACTGCGAGGTAAACTGGAAGCTGTCAACAGCAACTCGGCAAAAGACAAAGGTTTGTCCGATGCAGTACTGCAGTACTCGGGGTGGGGTCCATGGACGGGACTTCCGGGACGTGCTGTTTTCAGGCTACGCTCCAGACGGGGGGATGTTCATGCCCGAGAGTGTGCCTGTGCTGAGCCCAGACACCTTGAGGGGCTGGAGGGGGCTGACCTACACCAAACTGGTGGTGGAGGTTGCCTCACTGTTCATCCCCACTCAGCTGATCCCCAGAGAAGACCTGGAGGTCCTAGTGGGTGAAGCCCTGTCTGGTTTCTCAGTGCCTGAGGTGTTGAGAATCGCCCGGCTAAAGGAGGGTCTGTCAGTGCTGGAGCTCTTCCATGGAGACACCTTGGCCTTTAAGGACCTGGCTATGACCTGCACTGTGCGCTTCCTCGACTACTTCCTGCGAAAAGAGAACCGCAGAGCTACTGTTCTTGTAGGTACATCAGGAGACACAGGTGGCTCGGCCATCCAGAGCGCCAAAGGTCTCAGTGGGTTGGATGTGGTGGTTGTTTACCCCCGAGGACGCATCACTCCAGTCCAAGAGAAACACATGATCACCTGCCTGGAGGACAATGTCCATGTGTTTGCAGCAGACGGCAGCTCAGATGACATAGATCAGCCTCTGCGCCGTCTTTTTGCCGACCAGGAGCTGGTCAGGTCTCACGGCCTGATGAGCCTCAACTCAGTCAACTGGTCTAGAGTCATGATCCAGCTCGCCCACTTCATCTATGCTTACCTGGAGCTCAGTGGTATGGAGCAGGCCAAGACCGACGGGGACCTGCCTGAGCTGGAGGTGGTGGTGCCCACTGGAGGGGCGGGAAACATTGCAGcTGGCTACATTGTAAAGCAGATGGGATTGCCCCTGAAGCTGGTGGCCATGGTGAATTCTAATGACATTGTGCACAGGACGGTAACCAGCGGGGACTTTTCCATGGCAGCTAATGTCACACAAACTTTGGCCCCTGCCATAGACATCCAGGACCCGTACAACATGGAGCGAGTGTTCTGGCTGCTGCTAGGCAGAGATGGAGCTTCAGTGAAGAACATGATGGAGGAGTTTCAACAATCACATAGACACTCTCTGCAGGAAAACACCCGCAAGCTGttgtcacaagttTTATCCTCTGGAGCAGTGACTGATGAAGGGATCCTGGAGACCATGAGGAGATGCTGGGAGGAGAACCAGTATGTCCTGTGTCCTCACACAGCTGTGGCTGTATGGCATCACTACCACTGTTCTCACAGCCCCAGGCTCAACAGGTGTTACATTGCGACAGCATCTCCAGCCAAGTTTCAGGCAGCAGTGCAAAAGGCTggcctgacctttgacctaccTGAGGCAGTACTGGCGTTGGACAAGTTGGCTATCCGTTACGAGAACCTGGAGAGAAGCCAGAACTGGTGCAAAGACTGGGAGGACAGACTGAGAGAGAAAATCCAGTCTGTGAGTTCAGCCAGGAAAAGCAGAGGGACTTATTACATCTGATTAGGAAAGATTCAATTGTAAAATAGGGTTTTACTTCAAAAACAATTAACaatttccctgaggggatcaatTAAGTATTCAGATTCGGATTCCGAAAACCTGATTGGCCATGAAATTGTGAAGTCAGGTGACTCTGGCAGCTTTTCCTTGATCTATGTACTTCCTTATCTTATCTTCTACAGTGATGTCATACACCACAAACCAATCAACTTTTCACAATGTTCAACCTTCCTTCCACAACTGTAAATGAATgctgaataaaataaaactgaatttgaa

Function

GO:

id name namespace
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233846 lncRNA downstream 250338 4057437 ~ 4057638 (-) True G172638
TU233840 lncRNA downstream 279352 4028386 ~ 4028624 (-) True G172632
TU233835 lncRNA downstream 331030 3972610 ~ 3976946 (-) True G172627
TU233804 lncRNA downstream 428657 3818907 ~ 3879319 (-) True G172600
XR_005636751.1 lncRNA downstream 530834 3776110 ~ 3777142 (-) True LOC120545877
TU233986 lncRNA upstream 3934 4336089 ~ 4339898 (-) True G172743
TU233998 lncRNA upstream 69656 4401811 ~ 4402024 (-) True G172755
TU234017 lncRNA upstream 132672 4464827 ~ 4465835 (-) True G172768
TU234026 lncRNA upstream 142084 4474239 ~ 4474861 (-) True G172777
TU234038 lncRNA upstream 176084 4508239 ~ 4509083 (-) True G172787
XM_039780383.1 mRNA downstream 1492 4270984 ~ 4306484 (-) True dqx1
XM_039780218.1 mRNA downstream 100659 4195746 ~ 4207317 (-) True nadk2
XM_039780220.1 mRNA downstream 100660 4195746 ~ 4207316 (-) False nadk2
XM_039780457.1 mRNA downstream 160163 4139166 ~ 4147813 (-) True cdk9
XM_039780633.1 mRNA downstream 376294 3891117 ~ 3931682 (-) False lrsam1
XM_039780051.1 mRNA upstream 8039 4340194 ~ 4357254 (-) True tbc1d13
XM_039780836.1 mRNA upstream 133785 4465940 ~ 4471158 (-) True LOC120546073
XM_039778751.1 mRNA upstream 178955 4511110 ~ 4542790 (-) True pip5kl1
XM_039780759.1 mRNA upstream 221091 4553246 ~ 4559768 (-) False dpm2
XM_039780729.1 mRNA upstream 231202 4563357 ~ 4599232 (-) True fam102ab
TU233934 other downstream 160221 4141853 ~ 4147755 (-) False cdk9
TU233826 other downstream 364145 3886588 ~ 3943831 (-) True G172620
TU233470 other downstream 1322716 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 2705820 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 3137187 1170203 ~ 1170789 (-) True G171868
TU234194 other upstream 438662 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 517793 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 517793 4849948 ~ 4897357 (-) False odf2a
XR_005636634.1 other upstream 1064478 5396633 ~ 5400678 (-) True LOC120545230
XR_005636815.1 other upstream 2488657 6820812 ~ 6820866 (-) True LOC120546140

Expression Profile