RNA id: XM_039780051.1


Basic Information

Item Value
RNA id XM_039780051.1
length 2118
RNA type mRNA
GC content 0.47
exon number 12
gene id tbc1d13
representative True

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 4340194 ~ 4357254 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTGGGGGGCGGGATTAGGAACAAGTTGTTTTTTGGTAAAGGAACAATCCTACAACTCACTGGCACGCGCTAGCTGACTCTGGGTCCAAACAGCGGTGCCTGCCCACTGTGTTGTTGTGAAGACGGAAGTGATAGGAGGACTTTCCTCTGGCAAATAATTCCTTCCTTTTTGGTACCAGTTAAAGGAATACACCGTCGCCTGCCCAGACATGACTACTGCGTACAGAAACAGAATACAGGAATTCAAAGTAGCCTTGAGTGAAGAAAACATAAACTTGAAGACACTGAGGGAGCTGTGCTTCAATGGAATCCCATTTGAAGGAGGCATACGAGCGCTTTGCTGGAAAATCCTTCTTAATTATCTGCCCCTTGACCAGACATTATGGGAGTCTTTCCTCAAAAAGCAGAGGGAGGTGTACTCCCAGTTCCTAAAAGAAATGATCATCCAGCCTGGTATTGCCAAAGCCAACTTGGGCCTTTTCAGAGAAGATGTGACTATGGAGGATCATcctcTAAATCCAAACCCAGACAGCAGGTGGAATAACTATTTCAAAGATAATGAAATTCTACTACAAATTGACAAGGATGTAAGGCGGTTGTACCCAGACATGGCATTCTTCCAGCGTCCTACAGATTACCCTTGCCAGCTTATCTTGGACCCTCAGAATGATTATGAGACGTTGCGTCGACGAGTCGAACAAACCACCCTGAAAGCGCAAACTGTCAACCGCAACCGCAGTGGAGTCACCAATGTCAGCTCCCCTGGAAAGGCATTTAACTTGTATCCATCTAACGAATATGAAGTGCTGCCCAATGGGAGTGAAGCACACTGGGAAGTGGTGGAGCGAATCCTCTTCATCTATGCCAAACTCAACCCTGGGATTGCCTACGTACAGGGCATGAATGAGATCGTTGGGCCAATTTACTACACCTTTGCCACGGACCCCAACAGCCAGTGGAAAGAGCACGCTGAAGCGGATACATTCTTCTGTTTCACCAACCTGATGTCGGAGAACAGAGACAACTTCATCAAGAGCCTGGATGACTCTCAGTGCGGCATCACATACAAGATGGAGAGTGTGTACTCCATGCTCAAAGACAAAGACCTAGAGCTCTATTTAAAGCTGGAAGAGCAGAACATCAAACCGCAGTATTTCACATTCCGCTGGCTGACCTTGTTGTTATCTCAGGAGTTCCTCCTGCCAGACGTCATCCGCATCTGGGACACCCTGTTTTCTGACCAGGACAGATTCCACTTCCTCATCCTGGTCTGCTGCGCCATGCTCATACTCATCCGAGATAACTTACTGGCAGGAGACTTCACAGTCAACATGAGATCACTGCAGGATTATCCTATCTCAGATGTCCACACCATCCTGATCAAGGCCAAAGATCTGCAGGACAACTCCTAACctgttaattttttttccctcctgcCTTTTCTGCTCCGATGTGGTAGGTGAGAGTTTAAACATTACAAAACATTGTCACGTCAAACATGTACCGTGGAAGGACTTGATCGATGAAGAGCTTGGACAGAAAACCCCAGCATACTGCTTTGTACTCGATGTCTGATGATTGCTCAGTGGGGGACTGCCGTGAAACCTTTGGAGGACATGCTGAAACTATTCCTTTCTTGAAGCAAAGAGAAGATGCCACTTGCTTTTTGATGCATTATGGGAAAAAGCTACCTTGGTACGTGGTCCTCCTCCTCTCACAGCCATCTCTCCCATGGAGACTTGTTGTGTTCAGATAATGATGATTGCACTGAACATCTGAGGGAGAGGGAGCCACATAAGTCCTACACTACAGATCTTAGTTTATCATGAAAACATAGCAGAAATGTTTAACAACAGAGCCAAGGATTCAGATGGAGCAAATGTTTAATTGGGTTGAGCAAAAGCGCATGTTTGTTCTtgaaaggaacacgccgacttattggcagtttagcttattcaccgtaacccccagagtaagagtaagtcgatacatacccttctcgtgtccgtgcgtgttgtaacccTGTTTGACAGCTCCACCgatagcttagcctagcacagaacctgcaggtaactggttccaactagcctactgctccgaataagtgacaaaataac

Function

GO:      GO:0005097,GO:0032851

KEGG:

id description
K24796 TBC1D13; TBC1 domain family member 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU233986 lncRNA downstream 296 4336089 ~ 4339898 (-) True G172743
TU233846 lncRNA downstream 282556 4057437 ~ 4057638 (-) True G172638
TU233840 lncRNA downstream 311570 4028386 ~ 4028624 (-) True G172632
TU233835 lncRNA downstream 363248 3972610 ~ 3976946 (-) True G172627
TU233804 lncRNA downstream 460875 3818907 ~ 3879319 (-) True G172600
TU233998 lncRNA upstream 44557 4401811 ~ 4402024 (-) True G172755
TU234017 lncRNA upstream 107573 4464827 ~ 4465835 (-) True G172768
TU234026 lncRNA upstream 116985 4474239 ~ 4474861 (-) True G172777
TU234038 lncRNA upstream 150985 4508239 ~ 4509083 (-) True G172787
TU234039 lncRNA upstream 151083 4508337 ~ 4509083 (-) False G172787
XM_039780050.1 mRNA downstream 8039 4307976 ~ 4332155 (-) False thnsl2
XM_039780048.1 mRNA downstream 9262 4307976 ~ 4330932 (-) False thnsl2
XM_039780049.1 mRNA downstream 9425 4307976 ~ 4330769 (-) True thnsl2
XM_039780383.1 mRNA downstream 33710 4270984 ~ 4306484 (-) True dqx1
XM_039780218.1 mRNA downstream 132877 4195746 ~ 4207317 (-) True nadk2
XM_039780836.1 mRNA upstream 108686 4465940 ~ 4471158 (-) True LOC120546073
XM_039778751.1 mRNA upstream 153856 4511110 ~ 4542790 (-) True pip5kl1
XM_039780759.1 mRNA upstream 195992 4553246 ~ 4559768 (-) False dpm2
XM_039780729.1 mRNA upstream 206103 4563357 ~ 4599232 (-) True fam102ab
XM_039778827.1 mRNA upstream 250470 4607724 ~ 4612536 (-) True naif1
TU233934 other downstream 192439 4141853 ~ 4147755 (-) False cdk9
TU233826 other downstream 396363 3886588 ~ 3943831 (-) True G172620
TU233470 other downstream 1354934 2984822 ~ 2985260 (-) True G172311
TU233144 other downstream 2738038 1596516 ~ 1602156 (-) True G172032
TU232928 other downstream 3169405 1170203 ~ 1170789 (-) True G171868
TU234194 other upstream 413563 4770817 ~ 4771303 (-) True G172920
XR_005636624.1 other upstream 492694 4849948 ~ 4897357 (-) False odf2a
XR_005636625.1 other upstream 492694 4849948 ~ 4897357 (-) False odf2a
XR_005636634.1 other upstream 1039379 5396633 ~ 5400678 (-) True LOC120545230
XR_005636815.1 other upstream 2463558 6820812 ~ 6820866 (-) True LOC120546140

Expression Profile